| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_0935 |
|---|
| Symbol | |
|---|
| ID | 6206529 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 1151030 |
|---|
| End bp | 1152142 |
|---|
| Gene Length | 1113 bp |
|---|
| Protein Length | 370 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641690558 |
|---|
| Product | NifR3 family TIM-barrel protein |
|---|
| Protein accession | YP_001817823 |
|---|
| Protein GI | 182412757 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.489775 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCTCG GGCCCTACGA ACTCTCATCG AACCTGTTTC TCTCGCCGCT GGCGGGTTAC
ACCAACCTGC CGTTCCGGTT GACCTTGCGC GAACTCGGCG GGCTGGGGTG GGTGACCACG
GACCTCGTCA ACGCGCGTTC GCTGCTCGAG CGCAATCCGG CCGCGCTCAA GCTCGTGGCC
AGCAGCGCGG AGGATCGGCC GATGTCGATC CAGCTATTCG GGAGCGTGCC GACGGAAATG
CGCGACGCCG CGCGGATCTG CGAGGACCTC GGCGCCCAAG CCGTCGACAT CAACATGGGC
TGCCCGGTGC GCAAGGTGGT GCGCGTCGGC GGCGGTTCGG CGATGATGAC AGAACTGAAC
CAGACCGCCG CGCTCGTCCG CGGGATGATT GAGGCGGTGA AGATTCCGGT CACGGCCAAG
ATGCGGCTCG GCTGGGACGA CGAGAATCTC ACCGCGCCGG ACCTCGCGCG CGTACTCGAG
GACGCGGGCG TTGCGGCCGT ATTCGTACAT GGTCGGACCC GCGCGCAGGG TTTCAGCGGC
ACGGTGAACC TCGCCGGCAT CGCCGCCGTG GTGCAGGCGG TTAAACGCAT TCCCGTGATC
GGCAATGGCG ACGTCACCAC CCCTGAGGCG GCGCGCGCGA TGATCGAGCA AACCGGCTGT
GCCGGCGTGA GCATCGGGCG GGGCGCATTT TACGACCCGT GGATTTTCCG ACGCACCCAC
CACCTTCTCA CCTCCGGCGA ACTGTGGCCC GAACCGGGCT TCGATGAGCG GGTGCGCGTG
ATGCGCCGCC ACTTCGAGCG CTATTGCGAA TTCTACGGTG AGGAAAAAGG CCCGCGGCTG
TTCCGCAAGG TGGCGCCTTG GTACGCCAAG CGGTTCGGTC CGGCCAAGCC GTTCAAGCGG
CGCATCATCA CGATCGACAG TCGCGCTGAC TTCGACGCCG CGCTGGCGGA GTATATCGCC
TGGCGCGCCA CGTACTGCGA CGAGCATGGC CAGCTGCTGC CGAAGTTCGT CCCGCCGCCG
ATGGTCGCGT CGTTCTTGAG GCCGCCCGGC GAGGCCGACG CGCGGGAACG CGAATCGATT
CCCGTGCCGA AAGGACCGGT CGACGTCTGG TGA
|
|---|
| Protein sequence | MRLGPYELSS NLFLSPLAGY TNLPFRLTLR ELGGLGWVTT DLVNARSLLE RNPAALKLVA
SSAEDRPMSI QLFGSVPTEM RDAARICEDL GAQAVDINMG CPVRKVVRVG GGSAMMTELN
QTAALVRGMI EAVKIPVTAK MRLGWDDENL TAPDLARVLE DAGVAAVFVH GRTRAQGFSG
TVNLAGIAAV VQAVKRIPVI GNGDVTTPEA ARAMIEQTGC AGVSIGRGAF YDPWIFRRTH
HLLTSGELWP EPGFDERVRV MRRHFERYCE FYGEEKGPRL FRKVAPWYAK RFGPAKPFKR
RIITIDSRAD FDAALAEYIA WRATYCDEHG QLLPKFVPPP MVASFLRPPG EADARERESI
PVPKGPVDVW
|
|---|
| |