| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_0081 |
|---|
| Symbol | |
|---|
| ID | 6208187 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 92990 |
|---|
| End bp | 94684 |
|---|
| Gene Length | 1695 bp |
|---|
| Protein Length | 564 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641689702 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_001816972 |
|---|
| Protein GI | 182411906 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.171245 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGATG ACCTCGAACT CCTCCGCCAC TACGCGGAAC AGCACTCGCC AGAGGCGTTT
GCGGAGCTCG TGCAGCGGCA CTGCGGTTTC GTCTATCACG CGGCTCTGCG CCAGCTGAGC
GGCGACGATC ACGCGGCGCG CGATGTCACC CAGCGCGTCT TCAACGATCT CGCGCGCAAA
GCCGCCCAGG TCAGCCTGCA ATCCTCTGTC GTCGGCTGGC TGCACACCGC GACGCGTTTC
GCCGCCGGCC AGGTCCGGCG CACCGAAGCC CGGCGGCGGG AACGTGAGCT CGCCGCGCAC
GCCCTCGAAC CCGCTGCGGC CGGAGCGGGC GCCCACGCCG ATTGGGAGAA ACTTCGGCCC
GTGATCGATG ACGCGATCGG CACGCTCAAC GAGCGTGATC GCGAGGCGGT GCTGATGCGG
TTTTTCGAGG ACCGGCCGTT TGCGGAGATT GGCGACCGGT TTTTCACGTC GGAGGACGCG
GCGCGCGTGC GCGTCAATCG CGCGCTGGAA AAACTCCAGT CCGCGCTGGC CCAGCGCGGG
ATCACGTCCA CGGCGACGGC GCTCGCGCTC GCGTTGGAGG GGCAGGCCGG GCTCGCGGCG
CCCGCGGGGC TGGCGAACAC GGTCACCAGC GGCGCGCTGG CCGGGGCGGC GGGCGGACCG
TTCGCGGCGT GGAGTTTTAT GGTCAATGTG AAATTCGTCG CCGGGCTCGC CGGGGTGATT
GCGCTGCTCG CGATCGGCAC GGTCGTGCAC CAGCGCGGGC AGCTCAGCGT GTTGAAAGCC
ACCGCCGCCG ACGCCCAGCA CGAGGTGGAC GAACTGCGGG CACGGCTGCA GCAGGCGCAG
GCGAAGATCG AGGCCGAGGG CAAGCGCGCG CAAGCGGCTG ACGAGGACAA CGCGCGCCTG
ATCGAAGCGA TGGGCCGGAT GGCTGCGCTC AACCGGCAGG ACGCCACGGC GACATCCAAA
ACCGCGGCCG TGACGGAGGA AGAGGTCGAC CGACGTCACC GCCACGCACG CGAACTGGCG
GCGAACGGCC GGCACGCCGA GGCGCTGCAG GAATATCTCT GGTGTTTCGA CGACGGCATG
ACGCGGTTTC CGCGCTTCTA CGGCACGCGC ACCAGTTACC TCCTCGCCGA GCTCGGCGAA
TTGGCCGACC AGTATCCGCC GGCGCGAGAG GCGTTGCGTG CCCGCCGGGA TGCGGCCGCG
GTCCGCATGC GCGGCAATCC GGCCGAGGCC ACGGCGGTGC CGGAGTGGGT CGCGTTGAAC
GAGGTGCTCG GCGACGGCGC GCAGAGCCTC GCGCTCTTCG ACGAACTGCC ACCGACCGAT
CCGCGCCGCC AGGCGCTCGG GGCGCGGCTG GTGGGGACGT TCGTGGAGCA GAAGCGTTAC
GCCGAAGCGA TCGAGGTGAA CGACTACGCG CGGCAGCGCG GCATGCTGGA GCTTTCGATC
TCGACCCTGC CGCAGGTGCC GGCGGGCGAG CAGCGCGAGG CGATCCGCCG GACGATCGTG
CAGGGATCCG CCGCCGGAAT CGAAGCGCTC GCGGGTGCGG GCGAGGCGCA GCAGGCGCGC
GAGCTGGCTT GGCGATTGCT GGAGTTCGAT TCATCAGAAA CGACCCGGCG ACTGCTGCAG
GAACACGCGA CGCGGGCGGG AGTGCCGGAG CTGATAAGCG GGCTGGCAAC CACGAGCGCC
GCACCGACCC GGTAA
|
|---|
| Protein sequence | MTDDLELLRH YAEQHSPEAF AELVQRHCGF VYHAALRQLS GDDHAARDVT QRVFNDLARK
AAQVSLQSSV VGWLHTATRF AAGQVRRTEA RRRERELAAH ALEPAAAGAG AHADWEKLRP
VIDDAIGTLN ERDREAVLMR FFEDRPFAEI GDRFFTSEDA ARVRVNRALE KLQSALAQRG
ITSTATALAL ALEGQAGLAA PAGLANTVTS GALAGAAGGP FAAWSFMVNV KFVAGLAGVI
ALLAIGTVVH QRGQLSVLKA TAADAQHEVD ELRARLQQAQ AKIEAEGKRA QAADEDNARL
IEAMGRMAAL NRQDATATSK TAAVTEEEVD RRHRHARELA ANGRHAEALQ EYLWCFDDGM
TRFPRFYGTR TSYLLAELGE LADQYPPARE ALRARRDAAA VRMRGNPAEA TAVPEWVALN
EVLGDGAQSL ALFDELPPTD PRRQALGARL VGTFVEQKRY AEAIEVNDYA RQRGMLELSI
STLPQVPAGE QREAIRRTIV QGSAAGIEAL AGAGEAQQAR ELAWRLLEFD SSETTRRLLQ
EHATRAGVPE LISGLATTSA APTR
|
|---|
| |