| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_0048 |
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| Symbol | |
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| ID | 6208089 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Opitutus terrae PB90-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010571 |
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| Strand | + |
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| Start bp | 59471 |
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| End bp | 60415 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641689669 |
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| Product | putative D-ribose-binding periplasmic protein |
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| Protein accession | YP_001816939 |
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| Protein GI | 182411873 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.955909 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.240357 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATCTC CCCTGATTCG CCGTTTTGCC GGGACGGTCG CGCTCGGCGT TTGCCTTGCG
TCCACCGCGG CTGCAGCTCC CACGATTGGC GTTCTCCTCA AAGGTCGTTC TGATTTTTGG
ACCGCCGTCG AAAAAGGCGC CGTCGAGGCC GCCCAGAAGG AAGGCCTCGA AATCACCGTC
AAGATGCCGC TGGCCGAAGC TGACATCGGC ATCCAAGTGC AGCTCCTCAA TTCGATGGTC
GCACAAGGCC TGCAAGCGAT CGTCATTGCG CCCGACAGCA AGGACGCGCT CGCCGCTCCG
GTCGCCGCCG CGATCGCAAA GGGAGTGAAG GTCGTCGTGC TCGACTCACC CATCGCCGGG
CCAATGCCGG TTTTCGTGGC CACCAATCAC GAGGACGCCG GTGCCGCCGC CGGCAAGTTG
CTCACCACCT TCGTCTCCGA AGAGGACGAA GTCTGCATCC TCAAACATTC GCAGACCGGC
GTCGCCACCA CGCTGCGCGA GCGCAGCGCC TACAACGCCA TCCATGACGT CTACCCGAAG
ATGGTCGTGC ACCGCGACAT CTACAGCGGC GCGGAAACCG GTTTCGAAGT CGAAAAAGCC
AAGCTCGTGT TCAGCCAGCA CCCCGACACC AAAGCGGTGC TTTGCTCAGG CACGCCCGGC
ACCATGGCGA TGCTGAAGGT GATCGAATCG CAGCAGCTCG GCGGCAAGGT GAAGCTCGTC
GGCTTCGGCT TTAATCTGAG TCCCACCATC GTGGCGGCGC TGCAAAACGA CGTGATGCAC
GGCTGGATTG CACAGGTGCC CAAGGAAATC GGCGCCAAGG GCGTGACCAT GGCCGCGGCA
CTGCTCAAGG GCCAGACCGT CCCTGAGCAG GTTTACTGCG ACTTCGTCGT CGTAACGAAA
GCCAACCTCG GCGAGCCGCA GGTACAGGCG CTGTTGCAGG AGTAG
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| Protein sequence | MTSPLIRRFA GTVALGVCLA STAAAAPTIG VLLKGRSDFW TAVEKGAVEA AQKEGLEITV
KMPLAEADIG IQVQLLNSMV AQGLQAIVIA PDSKDALAAP VAAAIAKGVK VVVLDSPIAG
PMPVFVATNH EDAGAAAGKL LTTFVSEEDE VCILKHSQTG VATTLRERSA YNAIHDVYPK
MVVHRDIYSG AETGFEVEKA KLVFSQHPDT KAVLCSGTPG TMAMLKVIES QQLGGKVKLV
GFGFNLSPTI VAALQNDVMH GWIAQVPKEI GAKGVTMAAA LLKGQTVPEQ VYCDFVVVTK
ANLGEPQVQA LLQE
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