| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_0047 |
|---|
| Symbol | |
|---|
| ID | 6205788 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 58656 |
|---|
| End bp | 59411 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641689668 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001816938 |
|---|
| Protein GI | 182411872 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1385] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR00046] RNA methyltransferase, RsmE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.133218 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGATT TTCGCGTTTT CTGCCTCCCG GCGACCGCCG AACCCTCCGA AATCACGCTT
TCGGCCGACG AATCGCACCA CCTGGTCGCG GTCAACCGCG CCAAACGCGG CGACACCGTC
GTGGCGTTCG ACGGCCGCGG CGTGGAGTGG ATTTGCGAGC TGGTCGACGA CCGCAAGAAC
GCCGCGCTCC TGAAGGTGCG TTTCCGCCAG AAAGCGCGGC CGCTCGCCTA CGAAATCACC
TTGGGACAGG CGCTGCCCAA AGGCGCGTCG ATGGACGCCA TCGTCCGCAA GGCCACTGAG
ATCGGCGCCA CGCGGATCGC GCCGCTCGAA AGCGAACGCA CGCAGGTGCA TCTCGATTCC
GACCGTTCCG ACCGCAAGAT CGACAAATGG CAGACCGCCG CGCTCGAAGC CGCGAAGCAA
TGTGGCAATC CGTTCCTCCC CGAAATCACG GCCGTCCAGA ATGCCTCAAC CTTCATGGAA
TCTGCCCGCG GTTATGACTT GAAACTCATC GCCAGCCTGC AGCCGGCCGC CAAGTCGCTA
AAAACCGTCC TCGCGGCCTT TCAGGCCACA CACGGCCGGA CCCCGAAAAA GGTACTGTGG
CTGGTCGGAC CCGAAGGTGA TTTCACGCCC GCGGAGATGA GTCTTTCGAA AACCGCCGGC
TTCGAGCCGA TCACGCTCGG GCCGCTCGTC CTGCGCTGCG AGACCGCCGC GGTGTACGCG
TTGAGTGTGT TGAGCTACGA ACTGCAGAAC GGCTGA
|
|---|
| Protein sequence | MPDFRVFCLP ATAEPSEITL SADESHHLVA VNRAKRGDTV VAFDGRGVEW ICELVDDRKN
AALLKVRFRQ KARPLAYEIT LGQALPKGAS MDAIVRKATE IGATRIAPLE SERTQVHLDS
DRSDRKIDKW QTAALEAAKQ CGNPFLPEIT AVQNASTFME SARGYDLKLI ASLQPAAKSL
KTVLAAFQAT HGRTPKKVLW LVGPEGDFTP AEMSLSKTAG FEPITLGPLV LRCETAAVYA
LSVLSYELQN G
|
|---|
| |