| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_0042 |
|---|
| Symbol | |
|---|
| ID | 6208086 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 52954 |
|---|
| End bp | 53802 |
|---|
| Gene Length | 849 bp |
|---|
| Protein Length | 282 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641689663 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001816933 |
|---|
| Protein GI | 182411867 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.144902 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCTTC GCCCGCCGCA AACCCAGCCG CAACAGCCAG GTATCGAGTC TGCCATGACG
CCGCGGCCGG TCAGCGAAGG CAACCACTTG AAACCGGCTG GCCGGCTGCT GGGCAAGGTG
GCTTTGATCA CCGGGGGCGA CAGCGGCATC GGGCGCGCCG TGGCGATCGC GTTCGCGCGG
GAAGGGGCAA ACATTGCGTT GAATTATCTG AACGAACACA CGGATGCGAT CGAGACGCGC
ACGCGGGTGG AGACGCTGGG GCGGAGCTGT CTGCTGCTGC CGGGCGATGT CGGCGACTCG
CGCGAGTGCG AGAAATTCGT GACCGCCACG CTCGCGAAAT ACGAAGGCAT CGACGTGGTG
GTGAACAACG CGGCGGAGCA GCACCCGCAG GCCTCGCTGG CCGACATCAC CGACGCGCAG
CTGGAGCGGA CGTTTCGCAC CAACATCTTT GCGCATTTCT ACCTCACGCG GGCGGCCTTG
CCGTACCTGA AGAAGGGCGC GACGGTCATC AACACCACGT CGGTGACGGC TTACCGCGGC
AGTTCCCATC TGCTCGACTA CAGCGCCACC AAGGGCGCGA TCGTGGCGTT CACCCGGTCG
CTGGCGCTGG CGCTCGTGGA AAAGGGGATC CGGGTCAACG CGGTGGCGCC GGGCCCGATC
TGGACTCCGC TGATCCCGGC GACGTTCTCG AAGGAAAAGG TCGCTTCGTT CGGCAGCGAC
GTGCCGATGA AGCGGGCGGG CGAACCGGAA GAGGTCGCAC CGTGCTACGT CTTTCTCGCC
TCGGAGGAGG CGTCCTACAT CACCGGCCAG GTGCTGCATC CCAACGGGGG TGAGATCATC
AACGGCTAA
|
|---|
| Protein sequence | MTLRPPQTQP QQPGIESAMT PRPVSEGNHL KPAGRLLGKV ALITGGDSGI GRAVAIAFAR
EGANIALNYL NEHTDAIETR TRVETLGRSC LLLPGDVGDS RECEKFVTAT LAKYEGIDVV
VNNAAEQHPQ ASLADITDAQ LERTFRTNIF AHFYLTRAAL PYLKKGATVI NTTSVTAYRG
SSHLLDYSAT KGAIVAFTRS LALALVEKGI RVNAVAPGPI WTPLIPATFS KEKVASFGSD
VPMKRAGEPE EVAPCYVFLA SEEASYITGQ VLHPNGGEII NG
|
|---|
| |