| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_0004 |
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| Symbol | |
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| ID | 6206991 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Opitutus terrae PB90-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010571 |
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| Strand | - |
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| Start bp | 4567 |
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| End bp | 6594 |
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| Gene Length | 2028 bp |
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| Protein Length | 675 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641689624 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_001816896 |
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| Protein GI | 182411830 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCCGG TCGAGGCCCA ATCGCGGATT GCCGAGTTGC GCGCGCAGGT CGCGCGACAC
GATGAACTCT ACCACCGCCG CGCGCAGCCG CAGATCGGCG ACTTCGAATA CGACGCGTTG
AAGCGCGAGC TCGCCGAGCT CGAGGCGGCA TGGCCGCAGT TTGCGCGCGG CGCGTCGCCG
ACGGAGCAGG TCGGCGACGA TCGCACGGAA GGGTTTCAAG TTTACCGCCA CCGCGAGCGG
ATGATGAGCC TGGACAACAC TTACTCGGAG ACCGAACTCC GGGAGTTTCA CGACCGACTG
GTGCGCGAGC TCGAGCGCGA CGGGCTGAAG TTCGTCATCG AGCCGAAGAT CGACGGACTG
GCCGTGAGCA TTACCTACGA GAAGGGAAAA CTCGTGCGCG CGGTCACGCG GGGCAACGGC
ATCGAAGGCG ACGACATCAC GACGAACGCG CTCACGATCA AGTCGCTCCC CCGCGAGCTG
AAACGTGCGG ACGGCGTGCC GCTGCCGGCG GTGATCGAGA TCCGAGGCGA GGTTTTTCTG
ACGACCGAAG AGTTTCTGCG GATCAATCGT CAACGCGAGG AAGCGGGCGA GCCACTCTAT
GCGAACCCAC GCAATCTTGC TGCGGGTACG ATCAAGCAGC TCGATCCGCG CGAAGTCGCG
CAGCGCAAAC TCGAGGTCGT GCTTTACGGC CGCGGTTATG TGGAGCCGGC GAGCGCGCTG
CCGGAGACGC AGGCGCAGTT TCACGGCTGG GTGAAGGCGT GGGGATTGCC GACGGTGGAG
AGGTTTTGGA CGGCGACCGG CGCCGACGAA ATCTGGGCGG CGGTGCAGGA GCTCGACGCG
TTGCGGGACA CCTTCGCCTA CGCGACGGAT GGCGCGGTGG TGAAACTCGA CGCGGTGCCG
CTGCAGCGAC GCGCGGGCTC GACGAGCAAA TCGCCCCGCT GGGCGATGGC CTACAAGTTC
GCGCCGGATC GGGCGGAGAC GCAGCTGCGC GCGATCACGG TGCAGGTGGG CCGGACCGGC
GTGCTCACGC CGGTGGCGGA GCTCGATCCG GTGCAACTCG CGGGCACGAC GGTGTCGCGC
GCGACGCTGC ACAACCGTGA CGAGATCGCG CGGAAGGACA TTCGCGTCGG GGATTTCGTG
TACGTCGAGA AGGCGGGTGA AATCATCCCG GCGGTGATCG GCGTGAATCC GGCGCGGCGC
GCGCCGGAGT GCGTGCCGTA TGTTTTCCCG GAGAAATGTC CCGAGTGCGG CACGGCGGTG
GTACAGCTCG AGGGCGAGGT GGCGGTGCGG TGTCCGAATT TTTCGTGCCC GGTGCAGGTG
CGGCGCCGCG TGCAGCATTT CGCGTCGAAA GCGTGCGTGG ACATCGAAGG CATGGGCGAG
GCGATGGTCG ACGTGCTGGT GGAAAAAGGC TGGGTGCACA GCGTGCCGGA CATCTACCAG
CTGAAACGCG AGAACCTGCT CACGCTCGGG AAGAGCGTGG AAAAATCCAC GGACAAGCTG
CTGGAGGCGA TCGAGGCGAG CAAACGCGCG GAGCTGTGGC GGTTCATCCA TGGGCTCGGG
ATTCCGCACG CCGGCGCCGC AGCGGCGAAG GATTTGGCGC GGACGTTTGG CGGACTCGAG
CGGCTGGCGA GCGCGCGCTA CGAGGATTTC ATTCGCGAGA AGGCGTCGGT GATCGGCGGG
ATTGGCGAGA CGATGGCGCT CGCGATCCTC GCGTATTTCG CCGAGCCGCG GAATCGTGCC
GTGGTGGACG AACTGGTGCG CGTCGGGGTG CAGCCGGTGG TGCCGAATTC GGGCAGCGCG
CTCGCGGGAA AAACCTTTGT GCTGACCGGC ACGCTGCCGA CGCTGACGCG GGACGAGGCG
ACGGCGCAGA TCGAGGCCGC CGGCGGGAAG GTGAGCAGCG GTGTGAGCAA GAAAACCAGC
TACGTGCTCG CGGGCGAGGA GGCCGGATCG AAGTTGGAAA AGGCGCGCGC GCTCGCCGTG
CCGGTGATCG ATGAGGCGGA GTTTCTGCGG CTGCTGAGCG GCGGCTAG
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| Protein sequence | MTPVEAQSRI AELRAQVARH DELYHRRAQP QIGDFEYDAL KRELAELEAA WPQFARGASP
TEQVGDDRTE GFQVYRHRER MMSLDNTYSE TELREFHDRL VRELERDGLK FVIEPKIDGL
AVSITYEKGK LVRAVTRGNG IEGDDITTNA LTIKSLPREL KRADGVPLPA VIEIRGEVFL
TTEEFLRINR QREEAGEPLY ANPRNLAAGT IKQLDPREVA QRKLEVVLYG RGYVEPASAL
PETQAQFHGW VKAWGLPTVE RFWTATGADE IWAAVQELDA LRDTFAYATD GAVVKLDAVP
LQRRAGSTSK SPRWAMAYKF APDRAETQLR AITVQVGRTG VLTPVAELDP VQLAGTTVSR
ATLHNRDEIA RKDIRVGDFV YVEKAGEIIP AVIGVNPARR APECVPYVFP EKCPECGTAV
VQLEGEVAVR CPNFSCPVQV RRRVQHFASK ACVDIEGMGE AMVDVLVEKG WVHSVPDIYQ
LKRENLLTLG KSVEKSTDKL LEAIEASKRA ELWRFIHGLG IPHAGAAAAK DLARTFGGLE
RLASARYEDF IREKASVIGG IGETMALAIL AYFAEPRNRA VVDELVRVGV QPVVPNSGSA
LAGKTFVLTG TLPTLTRDEA TAQIEAAGGK VSSGVSKKTS YVLAGEEAGS KLEKARALAV
PVIDEAEFLR LLSGG
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