| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6397 |
|---|
| Symbol | |
|---|
| ID | 6182542 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | - |
|---|
| Start bp | 1001928 |
|---|
| End bp | 1002929 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641689521 |
|---|
| Product | glycosyl transferase family protein |
|---|
| Protein accession | YP_001816380 |
|---|
| Protein GI | 172065668 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1215] Glycosyltransferases, probably involved in cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.441453 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.138484 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACATGC GCGCCACGCA ACTGCCGCCG GTCGTGTCGG TCGTCGTGCC GACCTACCGG
CGGCCCGACC TGCTCGAGCG CTGCCTCGAC GCGCTGTGCG TGCAGGTGTT CGATCCGACG
ACCTACGAGA TCGTCGTCGT CGACGACGAC CCGGCCGGCA GCGCGCGGGC CGTCGTCGAC
GCGTGCCGTA CCCGCGTGGC CGACGTGCCG GTGATCCGCT ACATGACCGC GCCCGATACA
CAGGGGCCGG CCGGCGCGCG CAACGTCGGC TGGCGCAGCG CGCGCGGCGC GCTGATCGCG
TTCACCGACG ACGACACGAT TCCCGATCCG ACCTGGCTGC GCCACGGCGC GGCCGCGCTG
CAGGCCGAGC CGTCGGCGGC AGCAGCGGCC GGGCGCATCG ACGTGCCGCT GCGGCCGCGC
CCGACCGACT ACGAACGCGA CGCGGCCGGC CTCGCGCACG CGGAATTCGC GACCGCGAAC
TGCTTCGTGC GGCGCGCGGC GCTCGAACGC GTCGGCGGTT TCGACGAACG CTTCACGCGC
GCGTGGCGCG AGGACGCCGA CCTGATGTTC GCGCTGCGCG AGCATGCGGG GCCGATCGTC
GAGGTCGACG CCGCGCGGAT CGTGCATCCG GTGCGCCCCG CGCGCTGGGG CGCGAGCATC
GGCCAGCAGT CGAAGGTGTA TTTCGACGCG CTGCTGTACA AGAAGCATCG CGCGACCTAC
CGGCGTCATA TCCGGCCGAT GCCGCCGTGG AACTACTACG CGGCCGTGCT GTTCGCACTC
GGCGCGATGG GCTGTTTCGC GGCCGGCTGG CGCACGGCGG GCATCGCGTG CGCGCTCGCT
TGGGGGGTGA TCACCGCCGC GTTCTGCGCG AAGCGGCTGC GCGGCACGCG GCTCACGCCG
TCGCATGTCG CCGAGATGAT CGTCACGTCG ATCGCGATTC CGCCGGTGTC GCTGTACTGG
CGCATGCGCG GCGCGTTTCA CTTCCGGGTG TTCTTCCTAT GA
|
|---|
| Protein sequence | MNMRATQLPP VVSVVVPTYR RPDLLERCLD ALCVQVFDPT TYEIVVVDDD PAGSARAVVD
ACRTRVADVP VIRYMTAPDT QGPAGARNVG WRSARGALIA FTDDDTIPDP TWLRHGAAAL
QAEPSAAAAA GRIDVPLRPR PTDYERDAAG LAHAEFATAN CFVRRAALER VGGFDERFTR
AWREDADLMF ALREHAGPIV EVDAARIVHP VRPARWGASI GQQSKVYFDA LLYKKHRATY
RRHIRPMPPW NYYAAVLFAL GAMGCFAAGW RTAGIACALA WGVITAAFCA KRLRGTRLTP
SHVAEMIVTS IAIPPVSLYW RMRGAFHFRV FFL
|
|---|
| |