| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6340 |
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| Symbol | |
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| ID | 6182644 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | - |
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| Start bp | 942882 |
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| End bp | 945731 |
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| Gene Length | 2850 bp |
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| Protein Length | 949 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641689466 |
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| Product | DNA ligase D |
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| Protein accession | YP_001816325 |
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| Protein GI | 172065613 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.15116 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGGCA AGCTCGATCC GTATCGGCGC AAGCGCCACT TCGGCGCGAC GCCGGAACCC
GAAGGCGCGC ACGGGCGCCG TACGCAGGCC GCTGCGAAGG CCGCCGCGCG CACGCGCGCA
CGGGGCGCTC ACCCGCTGCG CTTCGTGATC CAGGAGCACC ATGCACGGCG ACTGCACTAC
GACTTCAGGC TCGAACTCGA CGGCACGCTG AAATCGTGGG CCGTGCCGAA GGGGCCGAGC
TTCGATCCGT CGGTGAAGCG CCTCGCGGTG CACGTCGAGG ACCATCCGCT CGAATACGCG
TCGTTCGAAG GCCAGATTCC GGAGGGTCAT TACGGCGCGG GCTCGGTCGT CGTCTGGGAC
GAGGGCACGT GGACGCCCGA TGGCGGGCTC GCGCAGGCAC GCGAAGGCTA TCGCGCGGGC
AAGCTGACGT TCCGGCTCGA CGGTGAAAAG CTGCACGGCG GCTGGGCGCT CGTGCGCAGC
GGGCGGCAGC AGGGGCGGCA GGAGCAGTGG CTGCTGATCA AGGAGCGCGA CGACGACGCG
CGCAGCATGG ATGAATTCGA CGTCGTCGGC GAGCGGCCGG GCAGTGTGCA CGACGGCGCG
GCGTCGGCGC GTGCGGACGC GAAGAACGGC TCGGCGCGCG CGCGCGGTTC ACGGCAAGGG
CGCAGCGAGA AGCCCGCCAC GCGCGCCGCG CGGCATGACG ACCGGGCCCA CGACGGCCAC
GCCGGCGCGC CTGTCGACCC TTCCCGGATC GAAGGCGCGG TGCGCGCGCC GCTGCCCGAG
CACGTCGCGC CGCAACTCGC GACGCTGGTC GACGGTCCGC CGACGCAGGG CGACTGGTGC
TATGAACTGA AGTTCGACGG CTACCGGATT CTTGCGCGCA TTTCCGGCAA GGGCGCGCGC
CGGCACGTGA AGCTGATGAC GCGCGAAGGC CGCGACTGGA CCGCGAAGCT GCGCGCGCAA
CGCGACGCGC TCGCGGCGCT CGATGTCGAC GCCGCATGGC TCGACGGCGA GGCCGTCGTG
CTCGGCAAGA ACGGCCTGCC CGATTTCCAG GCATTGCAGA ACGCATTCGG CGGCGGGCAT
TCGGACGAGA TCACGCTGTT CGTGTTCGAC CTGCCTTATC TCGACGGTTA CGACTTGCGC
GACGCACCGC TCACCGCGCG CCGCGCGTTG CTCGAACCGC TGCTCGCCGA CAGCGATCCC
ACGCGGCTGC GCTTTTCGCC CGATCTCGGC GACGACGTCG CATCGCTGAT CGCGAGCGCC
TGCGACACCG GCCTCGAAGG GCTGATCGGC AAGCGCGCCG AGTCGCGCTA TCGCGCCGGA
CGCTCGCCCG CGTGGATCAA GCTCAAGTGC CGGCGCCGGC AGGAGTTCGT GATCGGCGGC
TATACCGAGC CGTCGGGCAG CCGGCACGGC TTCGGCGCGC TGCTGCTCGG CGTGCACGAA
CCGGCCGCGG ACGGCAAGCG GCGGCGCGGG CCGGGGCCGC TGCGCTACGT CGGCCGCGTC
GGCACCGGCT TCGACACGCG GATGCTCGAC CGGCTTACTC CCATCCTGCG CAAGCACGAA
CGCGACAAGA TGCCGTTCGA TCCGCCGCCG CGCGAACGCT CGCGCACGCC CGTGCACTGG
ATCGAGCCGG TGCTCGTCGC CGAATGCGAA TTCGCGGAAT GGACCGGCGA CGGTATCGTG
CGGCAGGCCG CGTTCATCGC GCTGCGCGAC GACAAGCCGG CGGCACGGAT CGTCCGCGAG
GTGCCGAAGC ATACGGAAAC GGAGGTGCAG ATGGATCAGC GTGAAACCGC GCAGCACGAA
AGGCACAAGC CTGGCCGCAC GGCGCACGCC GGGCGCGACA CGGGCGATAC CAGCGACACC
AGCGACACCA GCGACACCAG CGACACCAGC GACACCAGCG ACGGCAAACA CCCCGCGCGC
TCACGCGGCT CCCGTCGCGC CGAGGCCGAC GATACCGGCC CCGACCAGCT CGGCCGCGTC
CGCATCAGCC ATCCGGAGCG CGTGATCGAT TCGCACAGCG GCACGCGCAA GATCGATCTG
GCGCGCTACT GGCAATGGGT TGCGCCGTGG CTGCTGCCGG ACCTGAAGGG CCGGCCCGTG
TCGCTCGTGC GCGCGCCGGG CGACATCTCG GGCGAGCTGT TCTTCCAGAA GCACGCGGAG
CGCCGCGAGA TCCCGTTCGT CACGCAGCAC GACGGGCTCG ATCCGGGCCA TGGCCCGCTG
CTGTCGCTCG ACAGCGTCGA CGCGCTGCTC GGCGCCGCGC AAATGGGCAC GATCGAACTG
CATACGTGGA ATGCGCACGC GTCGAACATC GAGCGGCCCG ACCGGATCGT GTTCGACCTC
GATCCCGATC CGGCGCTGCC GTGGAGCGCG ATGATCGACG CCGCCCAGCT CGTGCGCGGG
CTGCTCGACG AACTCGGCCT CATCTCGTTC TGCAAGACGA GCGGCGGCAA GGGGCTGCAC
GTCGTCGTGC CGATCACGCG GCACATGGGA TGGGACGAAG TGAAGGACTT CTCGCGCGCG
GTCGCGCAGC ATGTCGCGGG TGCGTTGCCC GATCGCTTCA CCGCGACGAT GGGCCCGAAG
CACCGGCGCG GCAAGATCTT CATCGACTAC CTGCGCAACG GCCGTGGCGC GAGCACGATC
GCCGCGTACT CGGTGCGCGC GCGGCCCGGG CTCGGCGTGT CGGTGCCGCT GCGCTGGGAC
GAGGTGCCCG ACACGACGGG CGGCGCGCAA TGGACGATCG ACACGCTGCA CGAACGCCTC
GATCGACTGA AGCGCGATCC GTGGGACGGC TATGACGACA CGCGCCAGCG GATCACCGCA
CAAATGCGCG CGCGGCTCGG CACGTCGTGA
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| Protein sequence | MAGKLDPYRR KRHFGATPEP EGAHGRRTQA AAKAAARTRA RGAHPLRFVI QEHHARRLHY
DFRLELDGTL KSWAVPKGPS FDPSVKRLAV HVEDHPLEYA SFEGQIPEGH YGAGSVVVWD
EGTWTPDGGL AQAREGYRAG KLTFRLDGEK LHGGWALVRS GRQQGRQEQW LLIKERDDDA
RSMDEFDVVG ERPGSVHDGA ASARADAKNG SARARGSRQG RSEKPATRAA RHDDRAHDGH
AGAPVDPSRI EGAVRAPLPE HVAPQLATLV DGPPTQGDWC YELKFDGYRI LARISGKGAR
RHVKLMTREG RDWTAKLRAQ RDALAALDVD AAWLDGEAVV LGKNGLPDFQ ALQNAFGGGH
SDEITLFVFD LPYLDGYDLR DAPLTARRAL LEPLLADSDP TRLRFSPDLG DDVASLIASA
CDTGLEGLIG KRAESRYRAG RSPAWIKLKC RRRQEFVIGG YTEPSGSRHG FGALLLGVHE
PAADGKRRRG PGPLRYVGRV GTGFDTRMLD RLTPILRKHE RDKMPFDPPP RERSRTPVHW
IEPVLVAECE FAEWTGDGIV RQAAFIALRD DKPAARIVRE VPKHTETEVQ MDQRETAQHE
RHKPGRTAHA GRDTGDTSDT SDTSDTSDTS DTSDGKHPAR SRGSRRAEAD DTGPDQLGRV
RISHPERVID SHSGTRKIDL ARYWQWVAPW LLPDLKGRPV SLVRAPGDIS GELFFQKHAE
RREIPFVTQH DGLDPGHGPL LSLDSVDALL GAAQMGTIEL HTWNAHASNI ERPDRIVFDL
DPDPALPWSA MIDAAQLVRG LLDELGLISF CKTSGGKGLH VVVPITRHMG WDEVKDFSRA
VAQHVAGALP DRFTATMGPK HRRGKIFIDY LRNGRGASTI AAYSVRARPG LGVSVPLRWD
EVPDTTGGAQ WTIDTLHERL DRLKRDPWDG YDDTRQRITA QMRARLGTS
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