| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6287 |
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| Symbol | |
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| ID | 6182728 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | + |
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| Start bp | 875947 |
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| End bp | 878586 |
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| Gene Length | 2640 bp |
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| Protein Length | 879 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641689414 |
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| Product | cytochrome c oxidase, subunit I |
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| Protein accession | YP_001816273 |
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| Protein GI | 172065561 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1
[COG1845] Heme/copper-type cytochrome/quinol oxidase, subunit 3 |
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| TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.171761 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.0477153 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGTTG CCCACGACAC GCCCACCGCG CTCAGCCGCG TGCCCGACCT CGGCGACGCG
CCGCCGGGCT CCGCGCACGA GCGCGCGCTC GCCGCGCTGT GGGAATCGGA ACCCGGCTGG
CGCGGCTGGC TCGGCACGGT CGATCACAAG CGCATCGGGC TGCGCTACAT CGTCACCGCC
TTCGCGTTCC TGCTGCTCGG CGGCGTCGAG GCGCTCGTGA TGCGCATCCA GCTCGCGCGG
CCGAACGCGA CGGTGCTCAC GCCCGCGCAG TACGACGCGC TGTTCACGAT GCACGGCGTC
ACGATGATCT TCCTGTACGC GCTGCCGGTG CTGTCCGGCT TCGCGAACTA TCTGTGGCCG
CTGATGCTCG GCTCGCGCGA CATGGCGTTC CCGCGGCTCA ATGCGTTCTC GTACTGGGCG
TTCCTGTTCG CCGGGCTGTT CCTGTATGCG AGCTTTCCGC TCGGCGCGGT GCCCGACGGC
GGCTGGTTCA ACTACGTGCC GCTCACGTCG CTCGACTACA GCACCGGCGC GAACATCGAC
ATCTATGCGC TCGGGATGAT CCTGCTCGGC ATCTCGACGA CCGGCGGCGC GGCGAACTTC
GTCGTCACGC TGCTGCGCAT GCGCGCGCAC GGGATGTCGA TCGACCGGCT GCCGATCATC
GTATGGGGCA CGCTGACCGC ATCGGTCGCG AACCTCGTCG CGGTGCCGTC GGTGAGCCTC
GCGTTCCTGC TGCTGTGGCT CGACCGCAAT GCCGGCACGC ACTTCTTCGA CGTCGCGAAC
GGCGGCCGGC CGCTGCTGTG GCAGCACCTG TTCTGGATGT TCGCGCACCC GTGGGTGTAT
GTGGTCGTGC TGCCCGCGAT GGGGATCGTG TCGGACGCAT TGCCGACCTT TTGCCGCCGG
CCGCTCGTCG CGTACGAGGC CGTCGCGGTG TCGACGGTCG CGACGATGCT GATCGGCTTC
GAGGTGTGGG TCCACCACAT GTTCGCGACC GGCATCGCGC CGCTCGCACT CGCGTTCTTC
GGCGCGGCGA GCATGCTGAT CTCGATCCCG AGCGCGGTCG CGGTGTTCGC GTGGCTCGCG
ACGATCTGGA CCGGCCGCCC GGTGTTCCGC ACGCCGTTCC TGTATTTCGC GGGCTTCGTG
CTGATGTTCG TGGTCGGCGG CGTATCCGGC GTGATGACGG CCGCGGTGCC GCTCGACTGG
CAGTTGACCG ACACGTACTT CGTCGTCGCG CACCTGCATT ACGTGCTGCT CGGCATCAAC
GTGTTCCCGG TGCTCGGCGG CGTCACGTAC TGGTTCCCGA AGTTCACCGG GCGGATGATG
AACGAGCGCT TCGGACGCCT GACGTTCTGG GTCGTGCTGG TCGGCTTCAA CCTCGGCTTC
TTCCCGATGC ACGTCGCCGG GCTGCTCGGG ATGCCGCGCC GCATCTATAC CTATCCGTCC
GGGATGGGCT GGGACACGTC GAACCTGCTG ACTACGATCG GCTCGTTCAT CTTCGGCATC
GGCATCGTGA TGTTCGTCGT CAACGCGCTC GTCAGCGCGC GGCGCGGCGC GCGTGCCGGC
GAGAATCCGT GGGGCGGCGC CGGGCTCGAA TGGTCGGTCG CGTCGCCCAC GCCCGTGTAC
AACTTCGCGG TACTGCCGCT CGTCGGCTCG CGGCATCCGC TGTGGGAAAC CCGCGACGAT
CCGAAGCGCA CCAGTCTGCG GGTCGGGTAC CGGCTCGCAG ACGGCCGCGA GGCGCTCGCC
GTCACGCCGC TCGCGGCGGC GCCGAGCGCG ATCCTCAAGA TGCCGGAGGA CACCTGCGTG
CCGTTCGTGC TCGCGCTGCT TGCCACGGCG GTGTTCGCGG CGATGCTGGC GCGCTCGCCG
ACGCTCGTGT GCGTGGCCGT CGCCGGTTGT GCGGTCGCGA CCGCCGTCTG GCTGTGGCCG
CGCGGCACGC TCGGGCAGCG CGCGGACCCG CCGGCCCGCG ACGACACGCA GGCGCCGTCG
GTCGCGGCCG GCGCGCATCC GGACGAACCG TCGTCGGCCA CGACGCCGGC GGGCGCGCCG
GCCGCGTGCG TCGAACCGCT GCCCGTCGGC AGTTGCGGCG AACGCGCGGG CGGCTGGTGG
GGTGTCATTA CGCTGATCGT GACCGAGGCC GGGCTGTTCG GCTACCTGCT GTTCTGCTAC
TTCTACCTGC AGTCGCAATC GTCCGCGCCG TGGCCGCCCG AAGGGATGCC GAAGATCGGC
CTGGCGGCCG GCAACACGGT CGTGCTGCTG TCGAGCAGCG TGTTCGTGTG GCTCGCCGAG
CGCGCGGTGC GGGCCGACAA GCGGCCGCGC GCGGTGGCCG CGCTCGCCGT CGCGCTGGTG
CTCGGCATCG CGTTCGCGCT CGTTCAGCTG CACGAGTGGC GCGACCATCC GTACGGCCCG
ACCGTACACC TGTACGGCAG CCTGTACTTC ACGATCACCG GCTTTCACCT CGCGCACGTG
GTAGCCGGGC TCGCGATCCT CGCGCTGCTC GCCGGCTGGA CGGCCGCCGG CTTCTTCAGC
GGCGAGCGGC GCGTCGCGCT GACGGTCGGC GGGCTCTACT GGCACTTCGT CGACATCGTG
TGGCTGTTCA TCTTCACCGC GCTGTACGTG TCGCCGTACT GGCTCAGGAG ATCGGGATGA
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| Protein sequence | MAVAHDTPTA LSRVPDLGDA PPGSAHERAL AALWESEPGW RGWLGTVDHK RIGLRYIVTA
FAFLLLGGVE ALVMRIQLAR PNATVLTPAQ YDALFTMHGV TMIFLYALPV LSGFANYLWP
LMLGSRDMAF PRLNAFSYWA FLFAGLFLYA SFPLGAVPDG GWFNYVPLTS LDYSTGANID
IYALGMILLG ISTTGGAANF VVTLLRMRAH GMSIDRLPII VWGTLTASVA NLVAVPSVSL
AFLLLWLDRN AGTHFFDVAN GGRPLLWQHL FWMFAHPWVY VVVLPAMGIV SDALPTFCRR
PLVAYEAVAV STVATMLIGF EVWVHHMFAT GIAPLALAFF GAASMLISIP SAVAVFAWLA
TIWTGRPVFR TPFLYFAGFV LMFVVGGVSG VMTAAVPLDW QLTDTYFVVA HLHYVLLGIN
VFPVLGGVTY WFPKFTGRMM NERFGRLTFW VVLVGFNLGF FPMHVAGLLG MPRRIYTYPS
GMGWDTSNLL TTIGSFIFGI GIVMFVVNAL VSARRGARAG ENPWGGAGLE WSVASPTPVY
NFAVLPLVGS RHPLWETRDD PKRTSLRVGY RLADGREALA VTPLAAAPSA ILKMPEDTCV
PFVLALLATA VFAAMLARSP TLVCVAVAGC AVATAVWLWP RGTLGQRADP PARDDTQAPS
VAAGAHPDEP SSATTPAGAP AACVEPLPVG SCGERAGGWW GVITLIVTEA GLFGYLLFCY
FYLQSQSSAP WPPEGMPKIG LAAGNTVVLL SSSVFVWLAE RAVRADKRPR AVAALAVALV
LGIAFALVQL HEWRDHPYGP TVHLYGSLYF TITGFHLAHV VAGLAILALL AGWTAAGFFS
GERRVALTVG GLYWHFVDIV WLFIFTALYV SPYWLRRSG
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