Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_6207 |
Symbol | |
ID | 6181998 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010557 |
Strand | - |
Start bp | 794214 |
End bp | 795287 |
Gene Length | 1074 bp |
Protein Length | 357 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641689335 |
Product | secretion protein HlyD family protein |
Protein accession | YP_001816194 |
Protein GI | 172065482 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.19774 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAACCA TCCCGCGCCC TCTTCTGATC GGCATCGGCG CGGCCGTGCT CGCGATCGGC GTCGCGTATT ACGGATGGGC GCGCTGGCGC GACGGCCAGA CGGATGCGGG GCTCGTCAGC GGCAACGGCC GCATCGAGGC GACCGAAATC GACGTCGCGA CCAAGCTGCC GGGGCGCGTC ACCGCCATGC TCGTCGATGA GGGTGACTTC GTGACGGCCG GCCAGCCGCT GGCGCGCATG GACGTCGTCG TGCTGCAGGC GCAGCTCGAC GAAGCGCAGG CCCGGGAGCA ACAGGCGGTG AACAACGCGG CGAGCATCGA AGCGCAGGTC GCGCAGCGCC GCAGCGACAA GACAGCGGCG GCGGCTGTCG TCGTCCAGCG CGAAAGCGAG CTCGACGCGG CCACGCGGCG GCTCGCGCGG TCCGAAACGC TGTCGCGCGA TGGCGCGTCG TCGATGCAGG AACTGGACGA CGATCGCGCA CGTGCCGGCA GCCTGCGCGC GACGGTGAAT GCCGCGCGCG CGCAGGTGGA AGCCGCCCAG GCCGCCGTCG ATGCAACGCG GGCCCAGCTG GTCGCGGCGC GCTCGGCCGT GACGGCCGCG CAGGCGACCG TGGCGCGCGT GCGGGCCGAC ATCTCGGATA GCGAATTGAC GTCGCCGCGC GACGGGCGCG TCCAGTACCG GATTGCCGAG TCGGGCGAAG TGCTGCCGGC GGGCGGCAAG GTGCTCAATG TCGTCGACCT GTCCGACGTC TACATGACGT TCTTTTTGCC CGAAGCGGTC GTCGGCCGGG TTCCGCTCGG CGCCGACGTG CGGATCGTGC TCGATGCCGC GCCGGAATAC GTGATTCCGG CACGCGTGTC TTATGTGTCG AGCACTGCGC AGTTCACGCC GAAGACGGTC GAGACGGCCA CCGAGCGGCA GAAACTGATG TTTCGGGTCA AGGCCCGCAT CGACCGCGAT CTGTTGCAGC GCCACCTGAA ACTCGTCAAG ACCGGGTTGC CTGGCGTCGC GTGGCTGAAG ACCGACCCGC ATGCCGGCTG GCCGGATCGC CTCGAGATCA AGGTGCCGAA ATGA
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Protein sequence | MKTIPRPLLI GIGAAVLAIG VAYYGWARWR DGQTDAGLVS GNGRIEATEI DVATKLPGRV TAMLVDEGDF VTAGQPLARM DVVVLQAQLD EAQAREQQAV NNAASIEAQV AQRRSDKTAA AAVVVQRESE LDAATRRLAR SETLSRDGAS SMQELDDDRA RAGSLRATVN AARAQVEAAQ AAVDATRAQL VAARSAVTAA QATVARVRAD ISDSELTSPR DGRVQYRIAE SGEVLPAGGK VLNVVDLSDV YMTFFLPEAV VGRVPLGADV RIVLDAAPEY VIPARVSYVS STAQFTPKTV ETATERQKLM FRVKARIDRD LLQRHLKLVK TGLPGVAWLK TDPHAGWPDR LEIKVPK
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