| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6087 |
|---|
| Symbol | |
|---|
| ID | 6182038 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | - |
|---|
| Start bp | 674203 |
|---|
| End bp | 674658 |
|---|
| Gene Length | 456 bp |
|---|
| Protein Length | 151 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641689217 |
|---|
| Product | alkylhydroperoxidase |
|---|
| Protein accession | YP_001816076 |
|---|
| Protein GI | 172065364 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2128] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00778] alkylhydroperoxidase AhpD family core domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.782887 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAGC GTCTCGATTA CAACCAGATT GCGCCCGCGG GCGTGAAGGC CCTCGGTGGC
GTGTATGGTT ATGTCATGCA GAGCGGGCTG TCGCCGGTTC TCGTCGACCT CGTCTACCTT
CGCGTGTCGC AGATCAATAA CTGCGCGTAC TGCCTCGACA TGCATACGCG CGACCTGCTG
AAGAAAGGTG TGAAGGTTGA AAAGCTGGCG CTGGTGCAGG CGTGGCGGGA AGCTGGCAAT
CTATTTGACG AACGCGAGCG TGCCGCGCTG GCATGGGCCG AGTCGGTCAC GCTGGTCGCG
GCGACCGGCG TACCGGACGA CGCCTACGAG GCGGCGCGCG CCGTATTCGA TGAACGCGAG
ATCGTCGACC TCACGATTGC AGTCAGCCTG ATGAACACCT ACAACCGTAT GGCTATCAGC
TTCCGCAATA CGCCACAGGC CGTGCTGGAA CAGTGA
|
|---|
| Protein sequence | MSKRLDYNQI APAGVKALGG VYGYVMQSGL SPVLVDLVYL RVSQINNCAY CLDMHTRDLL
KKGVKVEKLA LVQAWREAGN LFDERERAAL AWAESVTLVA ATGVPDDAYE AARAVFDERE
IVDLTIAVSL MNTYNRMAIS FRNTPQAVLE Q
|
|---|
| |