Gene BamMC406_6073 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_6073 
Symbol 
ID6182024 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010557 
Strand
Start bp646730 
End bp648103 
Gene Length1374 bp 
Protein Length457 aa 
Translation table11 
GC content67% 
IMG OID641689203 
ProductTolC family type I secretion outer membrane protein 
Protein accessionYP_001816062 
Protein GI172065350 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.523429 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACAGGA ACTGCCCTCT GCTTGCCGTG CTCGCATTCG CGTCAGCGCT CGCGGGCACC 
GCCGCGCCCG CCACCGCGCA AAGCCTGCAG GAAGCGGTCG AGCAGGCGAT CCGGACCAAC
CCCGAAGTCC TTGCCACGAC ATACAACAGG GAAGCGGCGG ATCAAGGCCT GAAGCAGGCG
CGAGCCGGCT ACTTGCCCCG CGTGGACGTC GACGCGGCGA TCGGCAAGGA GCAGCGCGAC
GATGTCGAAA CGCGTCTGCT CGGCCTGAAC CGCACGACGT TCACGCACCG GACGGCCAGC
GTGACGTTGT CGCAAATGCT GTTCGACGGT TTCGCGGTCA GGAGCGAAGT GGCGCGGCAA
CGGGCGCGCA TCGACTCGTC CGCGAATCGA GTCGCGTCAA CCTCGGAGGA CGTGGCACTG
CGCGTGGTGG GCGCGTATCT GGAAGTCCTG CGTCGCCAGG AAACGGTCGC CGCCGCCACC
GACAACCTCG AGTCGCACCG TCGAATCCAC GATCAGATCA AGCTGCGCAG CGACCGCGGC
GTCGGCCGGC GCGCCGATCT TTACCAGGCG GAAAGTCGGC TGGCGCTCGC GCAGGACAAC
CTGCGCTCCG AGCAAAGCAA CCTGAAAGAC GCCGAAGTAG CCTATGCGCG ACTGGTGGGC
GCGCCGCCGA ACGTGCTCGT CAAGCCGGTC GCGCCGGAAG CCGCGCTGCC GCCGACGGAA
CGGTTCGCAC TGGATACGGC GCTGGCGAAC CATCCGTCCC TCGCGGCCGC CGAGGCGGAC
GTCGCGCAGG CCAATGCACA CTATGACGCG GCGAAGGCCG CGCTATGGCC GCGCATCGAT
CTGGAGCTGA GCGCGAGCCA TGACCGTGAC GGCGTGCTCG GTCCGACGAA CGACCGCCGC
GTGATGCTGC GGTTGCGCTA CAACCTGTTT CAGGGCGGCG CCGACAAGGC GCATATCGGT
GAAGCGCATG CGCAGATCCG GGAGGCCGAG GAAGACCGCA ACCGCACGCG CCTGGAGATC
GCGGAAGGCG AATCGCACGC CTACAACGCG TACGTCACCG CACGCGACCG GTTGGTCGTG
CTCAAGCAGT ACGTCGATTC CAGCGCGTCG ACGCGCGAAG CGTACCTGTT GCAATTCGGC
ATCGGTCAAC GTTCGCTGCT CGACCTGCTC AACGCGGAGA ACGAGTATTA CAGCGCACGC
ATCGACTACA TCAGCGGCCA ATACGCGGAA GTGGCGAGCG CGTACCGCGT GTTCGCCGGG
ATGGGGCAAC TGCTCGACAC GCTTCACGTC GCGCGGCCGG CGCAGGCGTG GGGCGCCGGC
GGCATGCAGC CGGCGGTGGC CTTCGACCGG CGCGCATTCG ATCCTGGCAA ATGA
 
Protein sequence
MNRNCPLLAV LAFASALAGT AAPATAQSLQ EAVEQAIRTN PEVLATTYNR EAADQGLKQA 
RAGYLPRVDV DAAIGKEQRD DVETRLLGLN RTTFTHRTAS VTLSQMLFDG FAVRSEVARQ
RARIDSSANR VASTSEDVAL RVVGAYLEVL RRQETVAAAT DNLESHRRIH DQIKLRSDRG
VGRRADLYQA ESRLALAQDN LRSEQSNLKD AEVAYARLVG APPNVLVKPV APEAALPPTE
RFALDTALAN HPSLAAAEAD VAQANAHYDA AKAALWPRID LELSASHDRD GVLGPTNDRR
VMLRLRYNLF QGGADKAHIG EAHAQIREAE EDRNRTRLEI AEGESHAYNA YVTARDRLVV
LKQYVDSSAS TREAYLLQFG IGQRSLLDLL NAENEYYSAR IDYISGQYAE VASAYRVFAG
MGQLLDTLHV ARPAQAWGAG GMQPAVAFDR RAFDPGK