Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_6073 |
Symbol | |
ID | 6182024 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010557 |
Strand | - |
Start bp | 646730 |
End bp | 648103 |
Gene Length | 1374 bp |
Protein Length | 457 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641689203 |
Product | TolC family type I secretion outer membrane protein |
Protein accession | YP_001816062 |
Protein GI | 172065350 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.523429 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAGGA ACTGCCCTCT GCTTGCCGTG CTCGCATTCG CGTCAGCGCT CGCGGGCACC GCCGCGCCCG CCACCGCGCA AAGCCTGCAG GAAGCGGTCG AGCAGGCGAT CCGGACCAAC CCCGAAGTCC TTGCCACGAC ATACAACAGG GAAGCGGCGG ATCAAGGCCT GAAGCAGGCG CGAGCCGGCT ACTTGCCCCG CGTGGACGTC GACGCGGCGA TCGGCAAGGA GCAGCGCGAC GATGTCGAAA CGCGTCTGCT CGGCCTGAAC CGCACGACGT TCACGCACCG GACGGCCAGC GTGACGTTGT CGCAAATGCT GTTCGACGGT TTCGCGGTCA GGAGCGAAGT GGCGCGGCAA CGGGCGCGCA TCGACTCGTC CGCGAATCGA GTCGCGTCAA CCTCGGAGGA CGTGGCACTG CGCGTGGTGG GCGCGTATCT GGAAGTCCTG CGTCGCCAGG AAACGGTCGC CGCCGCCACC GACAACCTCG AGTCGCACCG TCGAATCCAC GATCAGATCA AGCTGCGCAG CGACCGCGGC GTCGGCCGGC GCGCCGATCT TTACCAGGCG GAAAGTCGGC TGGCGCTCGC GCAGGACAAC CTGCGCTCCG AGCAAAGCAA CCTGAAAGAC GCCGAAGTAG CCTATGCGCG ACTGGTGGGC GCGCCGCCGA ACGTGCTCGT CAAGCCGGTC GCGCCGGAAG CCGCGCTGCC GCCGACGGAA CGGTTCGCAC TGGATACGGC GCTGGCGAAC CATCCGTCCC TCGCGGCCGC CGAGGCGGAC GTCGCGCAGG CCAATGCACA CTATGACGCG GCGAAGGCCG CGCTATGGCC GCGCATCGAT CTGGAGCTGA GCGCGAGCCA TGACCGTGAC GGCGTGCTCG GTCCGACGAA CGACCGCCGC GTGATGCTGC GGTTGCGCTA CAACCTGTTT CAGGGCGGCG CCGACAAGGC GCATATCGGT GAAGCGCATG CGCAGATCCG GGAGGCCGAG GAAGACCGCA ACCGCACGCG CCTGGAGATC GCGGAAGGCG AATCGCACGC CTACAACGCG TACGTCACCG CACGCGACCG GTTGGTCGTG CTCAAGCAGT ACGTCGATTC CAGCGCGTCG ACGCGCGAAG CGTACCTGTT GCAATTCGGC ATCGGTCAAC GTTCGCTGCT CGACCTGCTC AACGCGGAGA ACGAGTATTA CAGCGCACGC ATCGACTACA TCAGCGGCCA ATACGCGGAA GTGGCGAGCG CGTACCGCGT GTTCGCCGGG ATGGGGCAAC TGCTCGACAC GCTTCACGTC GCGCGGCCGG CGCAGGCGTG GGGCGCCGGC GGCATGCAGC CGGCGGTGGC CTTCGACCGG CGCGCATTCG ATCCTGGCAA ATGA
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Protein sequence | MNRNCPLLAV LAFASALAGT AAPATAQSLQ EAVEQAIRTN PEVLATTYNR EAADQGLKQA RAGYLPRVDV DAAIGKEQRD DVETRLLGLN RTTFTHRTAS VTLSQMLFDG FAVRSEVARQ RARIDSSANR VASTSEDVAL RVVGAYLEVL RRQETVAAAT DNLESHRRIH DQIKLRSDRG VGRRADLYQA ESRLALAQDN LRSEQSNLKD AEVAYARLVG APPNVLVKPV APEAALPPTE RFALDTALAN HPSLAAAEAD VAQANAHYDA AKAALWPRID LELSASHDRD GVLGPTNDRR VMLRLRYNLF QGGADKAHIG EAHAQIREAE EDRNRTRLEI AEGESHAYNA YVTARDRLVV LKQYVDSSAS TREAYLLQFG IGQRSLLDLL NAENEYYSAR IDYISGQYAE VASAYRVFAG MGQLLDTLHV ARPAQAWGAG GMQPAVAFDR RAFDPGK
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