| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6028 |
|---|
| Symbol | |
|---|
| ID | 6181845 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | + |
|---|
| Start bp | 586132 |
|---|
| End bp | 587427 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641689158 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001816017 |
|---|
| Protein GI | 172065305 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.320097 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.669923 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTCGT TGCCGTCGCC GCGGTTGCAT GTCGCGCGCC TCGCGCGGAT CGCGCATTTC
GTGCCGCTGT CCGCGGCGGC GCTGATGCTC GGCGTCGCGA TGTCGTTTAC CGCGCCGTAC
CTGTCGCTGT TCGGCGTGGA GGCGGCCGGG ATGTCGCCGT TGCTCGCGGG CGTCTTCATG
ACGCTGATCG CGGCGAGCGG GGTGGTCGCG AGCACGTGGG CGGGGCGTTG GTCGGATCGC
CGCGACCGCC ACCGGCCGCT GCTCGTCGTG TCGCTCGCTG CGGCCGCGCT CGGCTTCGCG
CTGCTGTGCG TGCTGCGCGC GCACGGGCCG GTGATCGCCG CCGGCACGAT CCTGCTCGGT
GCGGGCGCCG TGTCGCTGTC GCAGATCTTT TCGTTCGCGC GCGCGGTGCT GCCGGTCGAC
GACGATGCGC AGCGCGAGCT TGCGTCGGCC GCGCTGCGCA CGATGTTGTC GGTCGCGTGG
GTGTTTGGTC CCGCGCTCGG CGCGCTGATT CTCGCGCAGA CGGGTTTTAC CGGGCTCTTT
CTCGCGGCTG CCGCGGGCTT TGTCGCGTGC GCGGCGATCG TCGCGCGGAT TCCGGAGCCC
GCGCGGCGGC CGGCAGCCGT TCACGTGCAG GCGGTCGGCG ACGACGCAAA GACAACCGTC
GATACGACGG CGATCGTCGT CGCGCCGCGC GCGAGCGTGC TGCGGACCCT CGTCGCGCTC
ACGCTGATGG GGCTCGCGGC GAACGCGACG ATGATCGTGC TGCCGCTGTA CATCGTGCGC
GGGCTCGGCG GCACGCCGAC GAACGTGTCG GCCGCGCTGG GCCTCGCCGC GTTGCTCGAG
ATCCCGATGA TGCTGTGGCT CGGCGTCCGG TCGACGCGGC TCGACAAGGC ACGCTGGCTG
ACCGCGTGCG CGGCCGTGCA CGCCGCGTAT TTCATCGGGC TCGCGGCGGT GACGCGGGCC
GACATGATCC TGCCGCTGCA ATTGCTGAGT GCGTGCGTGG TCGCGATCAC GTCCTGCCTC
GGGATGACGC GCGTGTGCGA CCTGATGCCC ACGCGCCCCG GCACCGCGAC CGCGATGTTC
TTCAGCACCG CGCGAGTCGG CTCGATCGCG TCGGGCGTGC TGTCGGGCGC GTGTGTGGAC
CTGTTCGGCT ATCGCGCGAC GTTCGCGGGG TGCTGCGGGC TCGCGCTCGT CGCATTCGTG
CTGCTTGCGC GGGATGCGCG CGGCCAGCAG GGCGGTGCGA GTGACGCAAG CGGCATGGCG
GCCCCTGCGA GGCGCCGCTT CGATGCACCG CACTGA
|
|---|
| Protein sequence | MQSLPSPRLH VARLARIAHF VPLSAAALML GVAMSFTAPY LSLFGVEAAG MSPLLAGVFM
TLIAASGVVA STWAGRWSDR RDRHRPLLVV SLAAAALGFA LLCVLRAHGP VIAAGTILLG
AGAVSLSQIF SFARAVLPVD DDAQRELASA ALRTMLSVAW VFGPALGALI LAQTGFTGLF
LAAAAGFVAC AAIVARIPEP ARRPAAVHVQ AVGDDAKTTV DTTAIVVAPR ASVLRTLVAL
TLMGLAANAT MIVLPLYIVR GLGGTPTNVS AALGLAALLE IPMMLWLGVR STRLDKARWL
TACAAVHAAY FIGLAAVTRA DMILPLQLLS ACVVAITSCL GMTRVCDLMP TRPGTATAMF
FSTARVGSIA SGVLSGACVD LFGYRATFAG CCGLALVAFV LLARDARGQQ GGASDASGMA
APARRRFDAP H
|
|---|
| |