Gene BamMC406_5931 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_5931 
Symbol 
ID6182178 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010557 
Strand
Start bp478969 
End bp479631 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content67% 
IMG OID641689062 
ProductOmpA/MotB domain-containing protein 
Protein accessionYP_001815921 
Protein GI172065209 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.639892 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAAAACA TCCAACTTGC CCTGCTGGCG TCCGTCGTTT CCCTCGCTGC CTGTTCGAGC 
GCGTCGGGGC CGACCTACAA CGCATACGAA TTGCAGTCCC GTGACGGCAT CCGCACCTTC
CGCGTCGACT GTCACGGCAT CCTGTCGAGC GCGAAGACCT GCATGAAGGT CGCGACGCGC
ATGTGCGCCA ACGACGCCGT GCGCGTGGTC GATACCACGA CGCCGTACCG CGACGGCGCC
GATCCGCACT CGATGGTGTT CCAGTGCGGC GCGGCACCCG CGCCGGTCCC CGCGGCCGCA
GCGCCCGCGC CCGCTGCGGT TGAGAAGGTG AGCCTCACCG GCGATGCCTA TTTCGCGACC
GACTCGGCCG TGCTGACGTC GGCGGCCACT GCCGCGCTCG ACAAGCTGCT GAACCAGCAA
GGCGACCGGC ATTTCGCGCG CGTGGAAGTG GACGGTTATA CCGACGCGAC CGGCTCGGAT
GCGCACAATC AAGCGCTGTC GAAGCGTCGG GCCGATGCGG TTGCGGCGTA TCTGCGTGGA
CACGGCCTGA AGGCGGATGC GTTTGCCGCG ACCGGGCATG GAGAAGCCAA TCCGGCGGCA
TCGAACGATA CCGTCGAAGG GCGGGCGCGC AATCGCCGGG TGGAAATCTC GCTGCAGAAG
TAA
 
Protein sequence
MKNIQLALLA SVVSLAACSS ASGPTYNAYE LQSRDGIRTF RVDCHGILSS AKTCMKVATR 
MCANDAVRVV DTTTPYRDGA DPHSMVFQCG AAPAPVPAAA APAPAAVEKV SLTGDAYFAT
DSAVLTSAAT AALDKLLNQQ GDRHFARVEV DGYTDATGSD AHNQALSKRR ADAVAAYLRG
HGLKADAFAA TGHGEANPAA SNDTVEGRAR NRRVEISLQK