Gene BamMC406_5881 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_5881 
Symbol 
ID6182779 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010557 
Strand
Start bp414603 
End bp415283 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content65% 
IMG OID641689012 
ProductGntR family transcriptional regulator 
Protein accessionYP_001815871 
Protein GI172065159 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.453374 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGAGA AACGCCCTGC TCTTGTCTAC GCCACGCGCG CCGAAGCCGC AGCGAACGAA 
TTGCGCCGCC GTATCCTGAC GGGGGAGTAT GTCGACGGCT ACCAGCTTCG CCAGGATGCG
CTCGCGACCG AACTCGGCAT CAGCCGCATC CCGCTGCGCG AAGCGCTCGT GCAGCTCGAG
AGCGAAGGGC TCGTGAAGAT CCTGCCCCAC AAGGGCGCGA TTGTCTCGGA GCTGTCCCCG
GAGGACATCA CCGAACTCTT CGAATTGCGC GCGCTGCTGG AACCCGTGCT GCTGAAAAAA
TCGATTCCGA AGCTCACCGC CGAGGATTTC GCGCGGCTCG ATGCGATTCT CGCGGAGTAC
AGCGAAGTGC TGCATGCGAG CCAGTCCGGA CGCTGGGGCG AACTGAACAC CGAACTGCAT
CAGCTGCTGC TGTCGCGCGC CGACCAGCCG AAGACCACGG CGATCGTCGC GTCGCTGCTG
CAACAGACCG ACCGTTACAC GCGCGTGCAA CTGTCTCTAT CCGAGGCCGC GCGCGACGTG
GCCGAATCCG AACACGCCGA ACTCGTCGCG TTGTGCCGCA AGGGCGATGC GCGCGCGGCG
GCGTCGCTGC TCAAGCGGCA CATCGAGCAT GCGGGCGGCG AGTTGAATGC GTTCCTGCGT
AACCGGCGGC TGGGGCGTTG A
 
Protein sequence
MNEKRPALVY ATRAEAAANE LRRRILTGEY VDGYQLRQDA LATELGISRI PLREALVQLE 
SEGLVKILPH KGAIVSELSP EDITELFELR ALLEPVLLKK SIPKLTAEDF ARLDAILAEY
SEVLHASQSG RWGELNTELH QLLLSRADQP KTTAIVASLL QQTDRYTRVQ LSLSEAARDV
AESEHAELVA LCRKGDARAA ASLLKRHIEH AGGELNAFLR NRRLGR