Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_5880 |
Symbol | |
ID | 6182778 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010557 |
Strand | + |
Start bp | 412776 |
End bp | 414098 |
Gene Length | 1323 bp |
Protein Length | 440 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641689011 |
Product | major facilitator superfamily metabolite/H(+) symporter |
Protein accession | YP_001815870 |
Protein GI | 172065158 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00883] metabolite-proton symporter |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.744654 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAACCGTA TCGAACCGAT CGCCGCTTCG TCCGGCGTTT CGCCCATGAC AAGGGCCGCC GCCGTGTTGC GCGTGACCAG TGGCAACTTC ATCGAACAGT TCGATTTCTT TCTGTTCGGT TTCTACGCGA CATCGATCTC GAGGATCTTT TTCCCTTCCA CCAGCGAATT CGCGTCGCTG ATGCTCACTT TCGCCGTGTT CGGCGCTGGT TTTCTCATGC GTCCGCTCGG TGCGGTCTTT CTCGGCGCGT ATATCGACAA GGTCGGACGG CGCACCGGGC TGATCGTTAC GCTGTCCATC ATGGCGAGCG GCACCATTCT GATTGCCTGC GTGCCGGGGT ACGCGACCAT CGGCCTGCTC GCCCCCGCGC TCGTACTGCT CGGGCGTCTG TTGCAGGGCT TCTCGGCGGG AGCCGAACTC GGCGGCGTGT CCGTCTATCT CGCGGAAATG GCGACGCCCG GCAACAAGGG CTTTTACACG AGTTGGCAGT CGGCGAGCCA GCAGGTCGCC ATCGTCATGG CGGCGGCCAT CGGTTACGCT CTGAACGAGT GGCTGTCCGC ACAGCAGATC GCCGCATGGG GCTGGCGCGT GCCGTTTCTT ATCGGCTGCG CGATCGTGCC GTTCCTGTTC GTGTTGCGCC GTTCGCTACA GGAGACCGCG GCGTTCGAAG CGCGGCGGCA TCATCCGCAG ACGCGCGACA TTTTTGCGAT GCTGCTCGGC AACTGGCGCA TCGTCGTCGG CGGCATGCTG CTGACGGCAA TGACCACCAC CACCTTCTAT CTCATCACGG TCTATACGCC GACTTTCGGC AAGTCGGTGC TGAAGCTGTC CACCTCCGAC AGCTTGATGG TGACGCTGCT CGCGGCTGCA TCGAATTTCG TCTGGCTGCC GATCGGCGGC ATGATCTCCG ATCGCATCGG CCGCAAGCCG CTGCTGCTCG CCATTTCGGT GCTGGCGATC TTCACTGCTT ATCCGGCGCT GTCCTGGCTC GCCGACGCAC CGAGCTTCGC GCGGATGCTG ATCGTGCTGC TGTGGTTCTC GTTCTTCTTC GGCATGTATA ACGGCGCGAT GGTCGCCGCG CTCACCGAAG TGATGCCGGT CGAAGTGCGC GTCGCGGGCT TCTCGCTGGC GTTCAGTCTC GCGACGGCGC TGTTCGGTGG CTTTACGCCA GCGGTATCGA CGTATCTGAT TCAGGTCCTG CATGACAAGG CCGCACCCGG CTACTGGCTG AGCTTCGCTG CGTTCTGCGG TTTGTGCGCG ACGCTCGGAC TGTACCGCCG CCGTGCGGGT AGCAACCCGT CGGTGGCATC GTCGGCCCGA TAG
|
Protein sequence | MNRIEPIAAS SGVSPMTRAA AVLRVTSGNF IEQFDFFLFG FYATSISRIF FPSTSEFASL MLTFAVFGAG FLMRPLGAVF LGAYIDKVGR RTGLIVTLSI MASGTILIAC VPGYATIGLL APALVLLGRL LQGFSAGAEL GGVSVYLAEM ATPGNKGFYT SWQSASQQVA IVMAAAIGYA LNEWLSAQQI AAWGWRVPFL IGCAIVPFLF VLRRSLQETA AFEARRHHPQ TRDIFAMLLG NWRIVVGGML LTAMTTTTFY LITVYTPTFG KSVLKLSTSD SLMVTLLAAA SNFVWLPIGG MISDRIGRKP LLLAISVLAI FTAYPALSWL ADAPSFARML IVLLWFSFFF GMYNGAMVAA LTEVMPVEVR VAGFSLAFSL ATALFGGFTP AVSTYLIQVL HDKAAPGYWL SFAAFCGLCA TLGLYRRRAG SNPSVASSAR
|
| |