Gene BamMC406_5880 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_5880 
Symbol 
ID6182778 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010557 
Strand
Start bp412776 
End bp414098 
Gene Length1323 bp 
Protein Length440 aa 
Translation table11 
GC content63% 
IMG OID641689011 
Productmajor facilitator superfamily metabolite/H(+) symporter 
Protein accessionYP_001815870 
Protein GI172065158 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00883] metabolite-proton symporter 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.744654 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCGTA TCGAACCGAT CGCCGCTTCG TCCGGCGTTT CGCCCATGAC AAGGGCCGCC 
GCCGTGTTGC GCGTGACCAG TGGCAACTTC ATCGAACAGT TCGATTTCTT TCTGTTCGGT
TTCTACGCGA CATCGATCTC GAGGATCTTT TTCCCTTCCA CCAGCGAATT CGCGTCGCTG
ATGCTCACTT TCGCCGTGTT CGGCGCTGGT TTTCTCATGC GTCCGCTCGG TGCGGTCTTT
CTCGGCGCGT ATATCGACAA GGTCGGACGG CGCACCGGGC TGATCGTTAC GCTGTCCATC
ATGGCGAGCG GCACCATTCT GATTGCCTGC GTGCCGGGGT ACGCGACCAT CGGCCTGCTC
GCCCCCGCGC TCGTACTGCT CGGGCGTCTG TTGCAGGGCT TCTCGGCGGG AGCCGAACTC
GGCGGCGTGT CCGTCTATCT CGCGGAAATG GCGACGCCCG GCAACAAGGG CTTTTACACG
AGTTGGCAGT CGGCGAGCCA GCAGGTCGCC ATCGTCATGG CGGCGGCCAT CGGTTACGCT
CTGAACGAGT GGCTGTCCGC ACAGCAGATC GCCGCATGGG GCTGGCGCGT GCCGTTTCTT
ATCGGCTGCG CGATCGTGCC GTTCCTGTTC GTGTTGCGCC GTTCGCTACA GGAGACCGCG
GCGTTCGAAG CGCGGCGGCA TCATCCGCAG ACGCGCGACA TTTTTGCGAT GCTGCTCGGC
AACTGGCGCA TCGTCGTCGG CGGCATGCTG CTGACGGCAA TGACCACCAC CACCTTCTAT
CTCATCACGG TCTATACGCC GACTTTCGGC AAGTCGGTGC TGAAGCTGTC CACCTCCGAC
AGCTTGATGG TGACGCTGCT CGCGGCTGCA TCGAATTTCG TCTGGCTGCC GATCGGCGGC
ATGATCTCCG ATCGCATCGG CCGCAAGCCG CTGCTGCTCG CCATTTCGGT GCTGGCGATC
TTCACTGCTT ATCCGGCGCT GTCCTGGCTC GCCGACGCAC CGAGCTTCGC GCGGATGCTG
ATCGTGCTGC TGTGGTTCTC GTTCTTCTTC GGCATGTATA ACGGCGCGAT GGTCGCCGCG
CTCACCGAAG TGATGCCGGT CGAAGTGCGC GTCGCGGGCT TCTCGCTGGC GTTCAGTCTC
GCGACGGCGC TGTTCGGTGG CTTTACGCCA GCGGTATCGA CGTATCTGAT TCAGGTCCTG
CATGACAAGG CCGCACCCGG CTACTGGCTG AGCTTCGCTG CGTTCTGCGG TTTGTGCGCG
ACGCTCGGAC TGTACCGCCG CCGTGCGGGT AGCAACCCGT CGGTGGCATC GTCGGCCCGA
TAG
 
Protein sequence
MNRIEPIAAS SGVSPMTRAA AVLRVTSGNF IEQFDFFLFG FYATSISRIF FPSTSEFASL 
MLTFAVFGAG FLMRPLGAVF LGAYIDKVGR RTGLIVTLSI MASGTILIAC VPGYATIGLL
APALVLLGRL LQGFSAGAEL GGVSVYLAEM ATPGNKGFYT SWQSASQQVA IVMAAAIGYA
LNEWLSAQQI AAWGWRVPFL IGCAIVPFLF VLRRSLQETA AFEARRHHPQ TRDIFAMLLG
NWRIVVGGML LTAMTTTTFY LITVYTPTFG KSVLKLSTSD SLMVTLLAAA SNFVWLPIGG
MISDRIGRKP LLLAISVLAI FTAYPALSWL ADAPSFARML IVLLWFSFFF GMYNGAMVAA
LTEVMPVEVR VAGFSLAFSL ATALFGGFTP AVSTYLIQVL HDKAAPGYWL SFAAFCGLCA
TLGLYRRRAG SNPSVASSAR