| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5742 |
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| Symbol | |
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| ID | 6181926 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | + |
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| Start bp | 264785 |
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| End bp | 266278 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641688878 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001815737 |
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| Protein GI | 172065025 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.238393 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.954317 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCTTC CTCACCCACT CCCGTTCGCC CGCCGTGTCG TCGCGCTCGG CGTTGTCACC
GCGTTGGCCG CTTGCTCGAC GCTGCCGCCC TATTCGCCGC CGACCGTCGC GGTGCCCGCG
CACTATGCCG GCGCGCCGGC CGCGCAACCG GGCTGGCAAG TCGCGGCGCC GGCCGATGCC
GCGTCGCGCG GCGCGTGGTG GACCGTGTTC AACGATGCGG ATCTGAACGC GCTCGAAGCG
CGCGTCGACG TGTCGAACCA GACCGTGAAG AAAGCCGTTG CCGACCTCGA GCAAGCGCGC
GCGACGGTCG ACTACCAGCA TGCGGGGTTT CTGCCGACAG TCACGGCGGG CGTGGCGCAA
AGCCGTTCAC GCATATCGCG GAACAAGCTG GGTTCGTCAC TCGCCGGCAA GACGACACCC
GACCATCAGC TCGGCGTGGC GGCAAGCTGG GAACCCGACG TGTTCGGCCG CGTGCGCGAT
GCGGTGGCAG GTGCGCAGGC GAACGCGGAC GCGAGCGCGG CCGATCTGCA AGCCGTCAAA
CTGTCGGTCA CGGCCGAACT CGCGACCGAC TATTTCGCGC TGCGCTCGCT CGACACGCAA
AAGCAGCTGC TCGACGACTC GGTGCGCGCG TATGCGGATG CGCTGAAGCT GCTGCAACAG
CAGCTCGCGG CCGGCGCGAT CGATGCGTCC GCCGTCGCGC AAGCCGAAAC GCAACTGGAA
GCGACGCGCA CGCAGGATAC CGACATCGAC GCGTCGCGCG CGCAGCTCCA GCATGCGATC
GCGACGCTCG TCGGCGAGAA CGCGTCGACG TTCGCGTTGC CGCCGCGCGT TCAAGCGTTC
GACGTGCCGG CCATTCCGGC CGGCGTGCCG TCGCAACTGC TCGAACGACG GCCTGACATC
GCCGCTGCCG AGCGTCGCGT CGCGACCGCG AACGCACAGA TCGGCGAAGC GCGCGCCGCG
TTCTTCCCCG ACCTCGTGCT GTCGGCGAGC GCGGGGCTCG AAAGCGGGTT CTTCATGCCG
TGGCTGACAG CGCCAAGCCT GTTCTGGTCG CTCGGCCCGC AACTCGTCGG CACGCTGTTC
GACGGCGGCC GGCGCAGCGC GACGCTGCGC GGCGCACACG CGCAGTACGA TGGCGAGGTC
GCCGACTATC GGCAGACCGT GCTGGGCGCA TTCCAGCAGG TGGAGGATCA ACTGTCCGCG
CTCGATGCGC TCGCGTCCGA AGCCGCCAGT CAACAGCGCG CGACCGACGC GGCCGACCTG
TCGCTGCGGC TGACGACGAA TCGCTTCAAT GCCGGCGCCG TCAGTTATCT GGACGTGGTG
ACCGCGCAGA CGATCGCGCT GACCAATCGG CGTCAGGCCG ACCAGATCGC CGCGCGCCGG
ATGGAAGCTG CGGTCGGATT GCTGAAGGCG CTGGGCGGCG GCTGGCACGC GGGCGCGGAC
ATCACCGCTT CCGCCGCCGG ATCGGGCACG GCGATCAAGA CGCAGGATTC CTGA
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| Protein sequence | MRLPHPLPFA RRVVALGVVT ALAACSTLPP YSPPTVAVPA HYAGAPAAQP GWQVAAPADA
ASRGAWWTVF NDADLNALEA RVDVSNQTVK KAVADLEQAR ATVDYQHAGF LPTVTAGVAQ
SRSRISRNKL GSSLAGKTTP DHQLGVAASW EPDVFGRVRD AVAGAQANAD ASAADLQAVK
LSVTAELATD YFALRSLDTQ KQLLDDSVRA YADALKLLQQ QLAAGAIDAS AVAQAETQLE
ATRTQDTDID ASRAQLQHAI ATLVGENAST FALPPRVQAF DVPAIPAGVP SQLLERRPDI
AAAERRVATA NAQIGEARAA FFPDLVLSAS AGLESGFFMP WLTAPSLFWS LGPQLVGTLF
DGGRRSATLR GAHAQYDGEV ADYRQTVLGA FQQVEDQLSA LDALASEAAS QQRATDAADL
SLRLTTNRFN AGAVSYLDVV TAQTIALTNR RQADQIAARR MEAAVGLLKA LGGGWHAGAD
ITASAAGSGT AIKTQDS
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