| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5714 |
|---|
| Symbol | |
|---|
| ID | 6181966 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | - |
|---|
| Start bp | 223133 |
|---|
| End bp | 223699 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641688845 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001815709 |
|---|
| Protein GI | 172064997 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.297365 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACGA AATCGACCGT CCGCGAACAG ATTCTCGACC ACGCGATCAC GCTGATGATG
CTGCGCGGCT ACAACGGCTT CAGCTATCGG GACCTGTCCG ATCTGGTAGG CGTGAAGACG
TCGAGCATCC ACTACTACTT CCCGTCGAAA GACGATCTCG TGCTGGAAGC GGTGGCGGCG
TACAGCGACG AAGTGCTTGC GGCGATGCGC GCGATCGATC CGGCGTTGCC GGCCGACGTC
AAGCTCAGCC TCTACACGAA GCTGTTCGGC AGAACGCTCG GCGATGGCAA CCAGATCTGT
CTGTGCGGCA TGCTCGCGGC GGACATCGAA TCGTTGCCGG AGAGCGTGCG GCAGGCGGTT
CAGGCCTTCT TCAAGGCCAA CGAGAAGTGG CTCGCCGAGT TGCTGGCGCA GGGCGCGAAG
GAACGCACGC TGCAGTTCAG CGGCAAGCCG GAAACGGCGG CGCGCACGTT GTACGCGGCG
TTTCAGGGGA GCGTGCTGGC CAGCCGGCTG TTTCATACGC GGGCGCGTCT CGAGGATGTC
GAGGCCGTCT GGAAAGCCCG GTCCTGA
|
|---|
| Protein sequence | METKSTVREQ ILDHAITLMM LRGYNGFSYR DLSDLVGVKT SSIHYYFPSK DDLVLEAVAA
YSDEVLAAMR AIDPALPADV KLSLYTKLFG RTLGDGNQIC LCGMLAADIE SLPESVRQAV
QAFFKANEKW LAELLAQGAK ERTLQFSGKP ETAARTLYAA FQGSVLASRL FHTRARLEDV
EAVWKARS
|
|---|
| |