| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5625 |
|---|
| Symbol | |
|---|
| ID | 6182708 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | - |
|---|
| Start bp | 127887 |
|---|
| End bp | 130112 |
|---|
| Gene Length | 2226 bp |
|---|
| Protein Length | 741 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641688757 |
|---|
| Product | catalase/peroxidase HPI |
|---|
| Protein accession | YP_001815621 |
|---|
| Protein GI | 172064909 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0376] Catalase (peroxidase I) |
|---|
| TIGRFAM ID | [TIGR00198] catalase/peroxidase HPI |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.482578 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.0776972 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAAAA AACGTATCGG AAAATCGGTC GTGGCCGCGC TCGCCATCAT CGCGATGAGT
GCCGGCACCG TTGCCGCGTG GGCCGACGGT GCGCCACGCA CGAATGACTT CTGGTGGCCG
GAGCGGCTCG ATCTTTCGCC GCTGCGTCAG CACGACGTCG AGTCGAATCC GTACGGGAAG
GATTTCGACT ATGCGCAGGC CTTCAACAAG CTCGATATCG AGGCCGTGAA GAAGGATATC
CGCGCGACCC TGACGACGTC GCAGGACTGG TGGCCGGCAG ACTACGGCAA CTATGGACCG
TTCTTCATCC GGATGGCGTG GCACGGAGCG GGCACCTATC GCACGTACGA CGGCCGGGGC
GGCGCCGGCG GCGCACAGCA GCGATTCGAG CCGCTGAACA GCTGGCCGGA TAACGCCAAT
CTCGACAAGG CGCGCCGTTT GTTGTGGCCG ATCAAGAAGA AATATGGCCA GAATATTTCG
TGGGGCGATT TGATGGTCCT CACCGGCAAT GTCGCACTTG AATCCATGGG TTTTCAAACC
TTCGGCTTTG GCGGCGGCCG GGAAGACGAC TGGCAATCGG ATCTGGTTTA TTGGGGAGCC
GGCACGAAAT TCATGTCGGA TAACCGCGAC AAGAACGGCA AGCTCGAGAA GCCGCTGGCG
GCCACCCAGA TGGGGCTGAT CTACGTGAAC CCGGAAGGTC CGAACGGCAA CCCTGATCCC
GTCGCCGCGG CAAAGGACAT TCGCGAGGCG TTCGGCCGCA TGGCGATGAA TGACGAGGAG
ACCCTCGCGC TGATCGCGGG CGGTCATACC TTCGGCAAGG CCCATGGCGC GGCGTCGCCC
GACAAATGCG TGGGCGCGGC ACCGGCGGGC GCGGGCGTCG AAGCGCAAGG CCTGGGCTGG
GCGAACAAGT GCGGTACCGG GAAGGGCGCC GACACGATCA CGAGCGGCCT TGAAGGCGCA
TGGTCGGTCG ACCCCGTTCA CTTCACGATG CAGTATCTCG ACAATCTGCT CGAACACGAT
TGGGTGCTGA CGAAGAGCCC GGCAGGCGCT CATCAGTGGA TGCCGAAGGA CGCGCAGGAC
ATCGTGCCGG ACGCACACGA TCCGTCGAAG CGACATCCGC TGATGATGTT TACGACCGAT
ATCGCGTTGA AGGTCGATCC CGCGTACAGC GCGATCGCCA AGCGTTTTCA GGCGCATCCC
GAGGAATTCA AGCTGGCGTT CGCAAAGGCG TGGTTCAAGC TGACGCACCG GGATCTGGGC
CCGAAGGCGC GCTATCTGGG CAAGGATGTG CCCAAGGTCG ACCTGATCTG GCAGGATCCG
CTGCCCGTTG CCGGCTACCA GATGATCGGC GACGCCGATA TCGCGGAGCT GAAGCGCAGG
ATCCTCGCAT CGGGGGTGCC GAAGTCGGAA CTGATCAAGA CCGCGTGGGC GTCCGCGGCC
TCGTTCCGTG CCACCGACTA CCGAGGCGGC GCAAATGGCG CGCGCATTCG CCTCGCGCCG
GAAAACGCCT GGGCGGTGAA TGACCCGGCG AGCCTGTCGA AAGTGCTGAA GTCGCTGGAA
GACATTCAGT CCGGCTTCAA CAGGAACAGA ACGGATGGCA AGCAGGTGTC GCTGGCCGAC
CTGATCGTGC TGGGCGGCAG CGCGGCCGTC GAGGATGCGG CCCGCAAGGC AGGCTACGAC
GTCAAGGTTC CATTCTCGCC GGGACGCGTC GATGCGACGC AGGCGCAGAC CGATGTCGCT
TCCTTCGCCG TTCTCGAGCC CACCTCCGAC GGGTTCCGCA ACTACTATCG GAAAAGCAAT
GAGCGATCGC CGGCCGAGTT GATGGTCGAC CGCGCGAGCA AGCTGGATCT CTCCGTTCCG
GAGATGACCG TTCTCGTGGG CGGGCTGCGT GCGCTGGACG CCAATGCGGG CCATTCAAGG
CTCGGTGTCC TGACCAATCG TCCCGGCACG CTGAGCAACG ACTTCTTCGT GAATCTGCTC
GACATGTCGA CCCAATGGAC GAAGTCCTCG AGTGCAGACG GGACTTACGA AGGGCGTGAC
CGCAAGACGG GCGCGCTCAA GTGGACGGCA AGCCCGGTCG ATCTGGTGTT CGGTTCCAGT
TCGGAGCTGC GGGCCGTTGC CGAAGTCTAT GCGTCGGACG ATGCGCACGA GAAGTTCGTG
CGCGACTTTG TCCACGCGTG GACGAAAGTG ATGAACCTCG ATCGCTTCGA TCTGAAGCGC
AGCTGA
|
|---|
| Protein sequence | MQKKRIGKSV VAALAIIAMS AGTVAAWADG APRTNDFWWP ERLDLSPLRQ HDVESNPYGK
DFDYAQAFNK LDIEAVKKDI RATLTTSQDW WPADYGNYGP FFIRMAWHGA GTYRTYDGRG
GAGGAQQRFE PLNSWPDNAN LDKARRLLWP IKKKYGQNIS WGDLMVLTGN VALESMGFQT
FGFGGGREDD WQSDLVYWGA GTKFMSDNRD KNGKLEKPLA ATQMGLIYVN PEGPNGNPDP
VAAAKDIREA FGRMAMNDEE TLALIAGGHT FGKAHGAASP DKCVGAAPAG AGVEAQGLGW
ANKCGTGKGA DTITSGLEGA WSVDPVHFTM QYLDNLLEHD WVLTKSPAGA HQWMPKDAQD
IVPDAHDPSK RHPLMMFTTD IALKVDPAYS AIAKRFQAHP EEFKLAFAKA WFKLTHRDLG
PKARYLGKDV PKVDLIWQDP LPVAGYQMIG DADIAELKRR ILASGVPKSE LIKTAWASAA
SFRATDYRGG ANGARIRLAP ENAWAVNDPA SLSKVLKSLE DIQSGFNRNR TDGKQVSLAD
LIVLGGSAAV EDAARKAGYD VKVPFSPGRV DATQAQTDVA SFAVLEPTSD GFRNYYRKSN
ERSPAELMVD RASKLDLSVP EMTVLVGGLR ALDANAGHSR LGVLTNRPGT LSNDFFVNLL
DMSTQWTKSS SADGTYEGRD RKTGALKWTA SPVDLVFGSS SELRAVAEVY ASDDAHEKFV
RDFVHAWTKV MNLDRFDLKR S
|
|---|
| |