| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6770 |
|---|
| Symbol | |
|---|
| ID | 6181693 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010553 |
|---|
| Strand | - |
|---|
| Start bp | 266211 |
|---|
| End bp | 267677 |
|---|
| Gene Length | 1467 bp |
|---|
| Protein Length | 488 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 641685516 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_001812421 |
|---|
| Protein GI | 172064771 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGCTG CGTTGTGCGC AGTCTTCTTG ATGAATTTGC CGAAGGTCGC TTGTGCGTTC
GATATCTTCG GTACGACGTC ATCGATACCC GCGACACCGG CCGGAACTGT CATTGAGAAT
TTGCCCTGCC GGCTTGGTCC GCTTGGCGTG CCGCTAAAGC TCGAAGAAGC GATTGACCGG
GCGCTGTGCA AGAATCCAAA AACCCGCGAA GCCTGGGCTA ACGTGAAAGT CCAGGCGGCT
GCCGTCGGGA CAGCAAAATC CGCGTACCTG CCGACGGCGA CGGCTTCGTG GCAGAAGGTC
CGGGAGGATC AGATCACCGA TGTAACCGGA CATCCAGCCC TGAGCGTGGA CAACCTCAGC
ACGATTCAAA CATGGTCAGT GTCGCTGAAT TGGGTGTTGT ACGACTTTGG GGGCCGCAAG
GCGGCATTGC GGAATGCAAC GCAACTCCTT GCCGCGGCGC GTGCCAATCA GAACGCAGCG
CTTCAAGAAA TTTTCTCGAC TGTTGCCACG GACTACTATG CGGCACAGGC CGCCGCCGGC
AAGCTCGCTT CCGCTCGAGA GACAGAGCAA AATGCCCGTG ATAGCTTCGT CGCCGCCGCC
GCGCGCGTTC GGAACGGGGT CGCAGCGATT ACAGACCAAT TGCAGGCGCA AACGTCTTAT
GCACAGGCGA CGTACAACCG AGCAAAGGCG GAGGGCGAAC TACAGGCATC TCTCGGAACG
ATTGCGTCTG ACATGGACGA AAATCCTGCT TTATCAATCA GCATCCCGGA CGTGTTAGAA
GGAGCAACAC CCGATCGGGA ATTCGTTGAA TCGGCCGCCG CATTGATTGA TGAAGCCGAG
CGGCTGCATC CAAGCGTCGC TGCGGCCCAA GCGCAACTTG AGGCGGCGGT GGCCAAAGAA
GAACAAACCC GGGCCGAGGG ACTACCAACT ATCAGCTTTG TCGGAAAGTA CTCTCGGAAC
AATCAGCCTG CCACTTTAGG CCTCGGTCAG CCGCCGTTTC CGGCAACCGG CCGTGATTGG
TACTTCGGCA TTCAAGTCCA AGTTCCGTTG TTCGAAGGGT TCAGTCGAAT CTATAAGACG
CGCGAGGCGC ATGCGCAAGT CGAAGTGCAG CAATCTGCTC TAGACAAAGC GAAGCAGCAG
GTTGGATTAG ATGTATGGAA GAGCTATCAA TCGCTGAAGA CAGATACTCA GAATCTGCAA
AATACTGACT CGCTGCTCGA GATTGCACGG AAGTCGTTCG ATGCTGCTCG ACACCGTTAT
AACGCTGGGG TCGGTAACAT CCTCGAGCTG TTGAATGCCC AGTCTTCACT ATCGGACGCG
ACTCGCCAAC GGATCCAAGC TCTAACCGAC TGGCGCGCTG CAAGACTGCA ACTCGGAGCG
AAGATCGGAA GACTTGGGCT ACCGGACGTC CGGCTGATCG AAGGCGAGTA TGTCTCCGGC
AGATTTGATC GTCAAACCAG CCGTTAG
|
|---|
| Protein sequence | MVAALCAVFL MNLPKVACAF DIFGTTSSIP ATPAGTVIEN LPCRLGPLGV PLKLEEAIDR
ALCKNPKTRE AWANVKVQAA AVGTAKSAYL PTATASWQKV REDQITDVTG HPALSVDNLS
TIQTWSVSLN WVLYDFGGRK AALRNATQLL AAARANQNAA LQEIFSTVAT DYYAAQAAAG
KLASARETEQ NARDSFVAAA ARVRNGVAAI TDQLQAQTSY AQATYNRAKA EGELQASLGT
IASDMDENPA LSISIPDVLE GATPDREFVE SAAALIDEAE RLHPSVAAAQ AQLEAAVAKE
EQTRAEGLPT ISFVGKYSRN NQPATLGLGQ PPFPATGRDW YFGIQVQVPL FEGFSRIYKT
REAHAQVEVQ QSALDKAKQQ VGLDVWKSYQ SLKTDTQNLQ NTDSLLEIAR KSFDAARHRY
NAGVGNILEL LNAQSSLSDA TRQRIQALTD WRAARLQLGA KIGRLGLPDV RLIEGEYVSG
RFDRQTSR
|
|---|
| |