| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6682 |
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| Symbol | |
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| ID | 6181571 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010553 |
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| Strand | + |
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| Start bp | 181653 |
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| End bp | 184826 |
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| Gene Length | 3174 bp |
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| Protein Length | 1057 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641685430 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_001812335 |
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| Protein GI | 172064685 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAATGA ACTCTTTGGA AGGACGGCTC CATCAGGAGC GTACGGTGAC GATCAGCAGC
GACGCAATGC CGCGGCTGCT TGGTCAACCC GCGCTCCGGT TCCTGTCGCT TCGCGGTGAA
GAACACCTGG GGAAGCTTTA TACGTATGAG GTCCTGTTGC GTACGCCGGA CGATTTTCAC
GTTCCGTTGT CGAGCAGTGC GAACCTCGAT CTGAAGGCAA TGATCGGAAC GGAGATGACC
GTCAGCATAC AGCTTGACGG CATCGGCACA GGCGCGGAGC GCGGTGTCGG CGCAGGCGGT
CGCGAGATCA GCGGTCTGGT CGTGAAGGCG GGCTTCCTGC GGACCGAGGG ACGCTACAAC
GTCTACCGGA TCGTGTTGAG GCCGTGGCTC TGGCTAGCGA CGCTGACGAA CGACTACAAG
ATCTTTCAGG ACAAAACGGT TGTCGAGATC ATCGACACCG TGTTGAGCGA TTATCCGTAC
CCGGTCGACA AACGGCTCGA CATCGACAAG TACACGGTGC AAGGCGAGAG CGAGCGCAAC
GAGCCGCGTG CGTTCCAGGT GCAGTACGGC GAGACGGATT TCGACTTCAT CCAGCGCTTG
ATGGAGGAGT GGGGGATCTA CTGGTTCTTC GAGCACTCCG ATAGCAAGCA CCGGCTCGTG
CTGTGCGATC ACATTGGGGC GCATCGCCGT TCGAGCAGTG CTGCTTATCA CGAAATCGCG
CATCACCCGG AAGGCGGCAA GACCGACATC GAGTATCTGA ATTATTTCTC GACAGACGAA
TCGCTGCGGC CGGGTCGGGT GGTGATCGAC GACTTCGACT TCACGCGGCC CAGGGCGCAA
CTGGTCACGT CCAATCATCA GCCGCGCGAA ACGAACTGGG GCGAGGGCGA GCTTTTCGAG
TGGCCGGGCG ACTATACGGA CAGCAAGCAC GGCGACCTGA TCAGCCGGGT CCGGATGGAG
GAGCGTCGCG CGCCGGGCAC CCGCGCATTC GGCAAAGGCA ACGTGCGAGG TGTCGCATGC
GGCCAGACCT TCACGCTCAC GAAGCACAAG CATGACGACG CGAACCGGGA GTACATCGTC
ATCGAAGCCG CGTTGATGAT GACCGAAATC GCCGACGAAA CCGGCAGCGG TTACCACTAC
GAATGTAACA ACGAGCTGAT CGTTCAGCCG ACGAGCGAAG TGTTCCGGAT GCCACGAGAG
ACGCCGAAGC CGACCACGAG TGGCCCGCAG TCGGCGATCG TCGTCGGCCC GCCAGGCCAC
GAGGTGTGGA CCGACGAGTT CGGTCGCGTG AAGGTGCGCT TCATGTGGGA CCGATACGCA
CGCAACGACG CGACGGATTC ATGTTGGGTG CGAGTCAGCC AGGCATGGGC GGGCGTGAAC
TTCGGCGGCA TCTATATCCC GCGGATCGGA CAGGAGGTGA TAGTCGGCTT CATGAACGGC
GACCCGGACC GCCCGCTGAT CCTCGGCAGC CTCTACAACA CAGTGACGCC GCCGCCGTGG
GACTTGCCGG GAGACGCGAC GAAGAGCGGC TTCAAGAGCA AGTCGATCAA GGGCGGCCGC
GAAAACTACA ACGGCATCCG TTTCGAGGAC AAGCCGGGGG TTGAGGAATT CCACATGCAG
GCGGAGCGAG ACATGAACCG CCTGACGAAG AGCAGCGAGT CGCATACCGT CGGCGTGAAT
TTTTCGATCG GGGTGGGCCT CGCGCACAAT CGCGCGGTGG GCGGCATGTT CAGCAGCATC
GTGGGTGGCG CGGCCAGCTA TGCGGTGGGC GGCGCCGAGT CGACGATCGT CGGCGGCGCT
AGCGCGTTGA ACGTAGGCGG TGCGTATGCG ATCGCGGTGG GCGGACCGAT GTCGACCTCC
GTTGGGGGCG CGTATGCGTT GACCGTCGGC GGGGCGCTTT CCATCGTGTG CGGTGCGGCG
GCCATTAACA TGACGGCCGA TGGCACGATC AAGCTGGTCG GTACGAAAAT CAAAGTGGTT
GGCAGCGATG AGGTCGTGAT CCAGGGTTCG CCGTTGCAAC TGAACCCGGG ACGCGAGGAC
GGTGCCGGTG GAGGCGGGGG CGGTGCGATT CCGCCGATTC CGGTGCCGTT GTTCTTCAGG
TCGATTACCG TGCCGATTTT GCCGCCGCTG CCGCCGCCGC CGGCCCTTCC GCCAGCGCCG
AGCAGTGAGC CGCCGCCGCC GAGCAGTGAG CCGCCGCCGA GCAGTGAGCC ACCGCCGCCG
AGCAGTGAGC CGCCGCCGCC GAGCAGTGAG CCACCGCCGC CGAGCAGTGA GCCGCCGCCG
CCGAGCAGTG AGCCGCCGCC GCCGAGCAGT GAGCCGCCGC CGCCGAGCAG TGAGCCACCG
CCGCCGAGCA GTGAGCCACC GCCGCCGAGC AGTGAGCCAC CGCCGCCGAG CAGTGAGCCA
CCGCCGCCGA GCAGTGAGCC GCCGCCGCCG AGCAGTGAGC CGCCGCCGCC GAGCAGTGAG
CCGCCGCCGC CGAGCAGTGA GCCGCCGCCG CCGAGCAGTG AGCCGCCGCC GCCGAGCAGT
GAGCCGCCGC CGCCGAGCAG TGAGCCACCG CCGCCGAGCA GTGAGCCACC GCCGCCGAGC
AGTGAGCCAC CGCCGCCGAG CAGTGAGCCA CCGCCGCCGA GCAGTGAGCC GCCGCCGCCG
AGCAGTGAGC CGCCGCCGCC GAGCAGTGAG CCGCCGCCGC CGAGCAGTGA GCCGCCGCCG
CCGAGCAGTG AGCCACCGCC GCCGAGCAGT GAGCCGCCGC CGCCGAGCAG TGAGCCACCG
CCGCCGAGCA GTGAGCCACC GCCGCCGAGC AGTGAGCCAC CGCCGCCGAG CAGTGAGCCA
CCGCCGCCGA GCAGTGAGCC ACCGCCGCCG AGCAGTGAGC CACCGCCGCC GAGCAGTGAG
CCACCGCCGC CGAGCAGTGA GCCACCGCCG CCGAGCAGTG AGCCACCGCC GCCGAGCAGT
GAGCCGCCGC CGCCGAGCAG TGAGCCGCCG CCGCCGAGCA GTGAGCCACC GCCGCCGAGC
AGTGAGCCAC CGCCGCCGAG CAGTGAGCCG CCGCCGCCGA GCAGTGAGCC GCCGCCGCCG
AGCAGTGAGC CGCCGCCGCC GAGCAGTGAG CCACCGCCGC CGAGCAGTGA GCCACCGCCG
CCGAGCAGTG AGCCACCGCC GCCGAGCGAA GAGCCGCCGC CATCGGAGTT TTAA
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| Protein sequence | MSMNSLEGRL HQERTVTISS DAMPRLLGQP ALRFLSLRGE EHLGKLYTYE VLLRTPDDFH
VPLSSSANLD LKAMIGTEMT VSIQLDGIGT GAERGVGAGG REISGLVVKA GFLRTEGRYN
VYRIVLRPWL WLATLTNDYK IFQDKTVVEI IDTVLSDYPY PVDKRLDIDK YTVQGESERN
EPRAFQVQYG ETDFDFIQRL MEEWGIYWFF EHSDSKHRLV LCDHIGAHRR SSSAAYHEIA
HHPEGGKTDI EYLNYFSTDE SLRPGRVVID DFDFTRPRAQ LVTSNHQPRE TNWGEGELFE
WPGDYTDSKH GDLISRVRME ERRAPGTRAF GKGNVRGVAC GQTFTLTKHK HDDANREYIV
IEAALMMTEI ADETGSGYHY ECNNELIVQP TSEVFRMPRE TPKPTTSGPQ SAIVVGPPGH
EVWTDEFGRV KVRFMWDRYA RNDATDSCWV RVSQAWAGVN FGGIYIPRIG QEVIVGFMNG
DPDRPLILGS LYNTVTPPPW DLPGDATKSG FKSKSIKGGR ENYNGIRFED KPGVEEFHMQ
AERDMNRLTK SSESHTVGVN FSIGVGLAHN RAVGGMFSSI VGGAASYAVG GAESTIVGGA
SALNVGGAYA IAVGGPMSTS VGGAYALTVG GALSIVCGAA AINMTADGTI KLVGTKIKVV
GSDEVVIQGS PLQLNPGRED GAGGGGGGAI PPIPVPLFFR SITVPILPPL PPPPALPPAP
SSEPPPPSSE PPPSSEPPPP SSEPPPPSSE PPPPSSEPPP PSSEPPPPSS EPPPPSSEPP
PPSSEPPPPS SEPPPPSSEP PPPSSEPPPP SSEPPPPSSE PPPPSSEPPP PSSEPPPPSS
EPPPPSSEPP PPSSEPPPPS SEPPPPSSEP PPPSSEPPPP SSEPPPPSSE PPPPSSEPPP
PSSEPPPPSS EPPPPSSEPP PPSSEPPPPS SEPPPPSSEP PPPSSEPPPP SSEPPPPSSE
PPPPSSEPPP PSSEPPPPSS EPPPPSSEPP PPSSEPPPPS SEPPPPSSEP PPPSSEPPPP
SSEPPPPSSE PPPPSSEPPP PSSEPPPPSE EPPPSEF
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