| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5487 |
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| Symbol | |
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| ID | 6180439 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | + |
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| Start bp | 2735247 |
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| End bp | 2736506 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641685242 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001812147 |
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| Protein GI | 172064496 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0000866815 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGACACATC GCCCCCTTCG CGTCGCCGCC CGGCTTGCGA CCGCCGCCGC CATCGCGTTC
GCTTCGTTCG GCGCCGCGGC GCCGGCCGAC GCGGGCACGC TGACGATCAA CATCGCGTTC
AAGGGCGCCA GCCAGCGCGC GGTCTGGCAG TCGACGATCG AGGCGTTCCA CAAGGCCCAT
CCCGACATCG ACGTGAAGCC CACCTTCGTC GACGAGGAAG CGTACAAGGT GCAGCTCCCC
GCGTGGCTCA CGACCGTCGC GCCCGACGTG GTCAACTGGC ACGCGGGCGA GCGCATGGCG
TACTACGCGA AGCGCGGGCT GTTCGAGGAC CTGAGCGGCG ACTGGGCGAA GAACGGGTGG
GACGCGATGT ACGCGTCGAC GCGCAGCGCA TCGTCGTACA ACGGCAAGCA GTACGCGGCG
CCGACCGTCT ATTACTCGTG GGGGCTGTTC TACCGCAAGG ACCTGTTCCG CAAGGTCGGC
ATCGCCGACG AGCCGAAGAC CTGGGACCAG TTTCTCGATG CGTGCAAGAA GCTGAAGGCG
GCCGGCATCA CGCCGATCGC GGTCGGCGGC CGCGACGCGT GGACGCTCGC CGGCTGGTTC
GACTATCTCG ACCTGCGCCT GAACGGCAAC GCGTTCCACC AGCAGCTGAT GGCCGGCGAC
GTGCCGTACA CCGACCCGCG CGTGAAGAAG GTCTACACGA CGTGGAAATC GCTGATCGAC
TCGGGCTACT TCATCGACAA CGCGCTGTCC TATGATCTCG ACGGCGCGCA GCCGTTCCTG
TTCCAGGGCA AGGCCGCGAT GATGCTGATG GGCACCTTCA TCGCGGCCGG CTTTCCGCCG
AACGTGAAGC AGGAAATGGG CTATTACCGC TTCCCGATCA TCGACGCGAA GGTGCCGACC
GCCGAGGACG GCCCGGTCGA ATCGCTGCAC ATCCCGACCA AGGCGAAGAA CAAGGCCGAC
GCGCATACGT TCCTCGCGTT CGTCGAGACG CCCGAGATGG GGGCGAAGCT CGCGGAAGGG
CTCGGCTCGC TGTCGGCCAA CAGCAAGTCG CCGGAGCCGG CCGATCCGGT TTCGCGGATC
GGCTTCCGGA TCCTCGCCGA CACCAAGGGC GGCGTCGCGC AGTTTTACGA CCGCGACATG
ACCAAGGAGA TGGCCGACGA AGGGATGAAG GGAATGCAGC AGTTCCTCGC GAATCCCGCG
CAGCTCGATA CCGTGCTCGC GCAGCTCGAA CAGACCCGCA AGCGGATCTA CAAGAAGTAA
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| Protein sequence | MTHRPLRVAA RLATAAAIAF ASFGAAAPAD AGTLTINIAF KGASQRAVWQ STIEAFHKAH
PDIDVKPTFV DEEAYKVQLP AWLTTVAPDV VNWHAGERMA YYAKRGLFED LSGDWAKNGW
DAMYASTRSA SSYNGKQYAA PTVYYSWGLF YRKDLFRKVG IADEPKTWDQ FLDACKKLKA
AGITPIAVGG RDAWTLAGWF DYLDLRLNGN AFHQQLMAGD VPYTDPRVKK VYTTWKSLID
SGYFIDNALS YDLDGAQPFL FQGKAAMMLM GTFIAAGFPP NVKQEMGYYR FPIIDAKVPT
AEDGPVESLH IPTKAKNKAD AHTFLAFVET PEMGAKLAEG LGSLSANSKS PEPADPVSRI
GFRILADTKG GVAQFYDRDM TKEMADEGMK GMQQFLANPA QLDTVLAQLE QTRKRIYKK
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