Gene BamMC406_5451 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_5451 
Symbol 
ID6179147 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand+ 
Start bp2690319 
End bp2690939 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content69% 
IMG OID641685206 
Product17 kDa surface antigen 
Protein accessionYP_001812111 
Protein GI172064460 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3133] Outer membrane lipoprotein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.349423 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.317102 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGCGCA TGCCTTCCAC CAAGACCGTT CTGTTCTCCA CGCTCGTCGC CGTGGCGGCG 
CTTCCGCTGA CCGCCTGCGT CGCACCCGGC TACTACGGTG CGCAACCCGG CTATCCGCAG 
CAGCAATATG CGACGCCCGG CTACGCGCAG CCCGCGTATT CGCAACCCGG CTACGTACAG 
CCGCAGCAGC CGGCTTATCC GAACCAAGCG CCGCAGTACG ACCAATACGG CAACCCGCAG 
CCTTACGGCG GCCAGTACGG CAACGGCTAC GGCTACGGCA CGCAATACGG CACGGTCGCG 
AACATCCAGC CGGTCAGCGG GTCGGTCGGC ACGTCGGGCG TGGCCGGCAC CGTCGTCGGT 
GCGCTGGTCG GTGGCGTGCT GGGTAACCAG TTCGGCCGCG GCCACGGCCG CGAGGCGGCG 
ACCGTGATCG GCGCGCTGGG CGGCGCCGTC GCCGGCAACC AGATCGGCCA GCAGATGGGC 
GCGGCCCAAC CGCCGAGCAG CTACCGGATC GACGTGCGCC TCAGCGACGG CTCGACGCGC 
TCGTTCGACG TGCAGTCTCC GGGCGACCTG CGCCCGGGCG ATCGCGTGCA GATCAACGGC 
AATCAGCTGT CGCGTTATTG A
 
Protein sequence
MMRMPSTKTV LFSTLVAVAA LPLTACVAPG YYGAQPGYPQ QQYATPGYAQ PAYSQPGYVQ 
PQQPAYPNQA PQYDQYGNPQ PYGGQYGNGY GYGTQYGTVA NIQPVSGSVG TSGVAGTVVG 
ALVGGVLGNQ FGRGHGREAA TVIGALGGAV AGNQIGQQMG AAQPPSSYRI DVRLSDGSTR 
SFDVQSPGDL RPGDRVQING NQLSRY