Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_5340 |
Symbol | |
ID | 6181154 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | - |
Start bp | 2562666 |
End bp | 2563370 |
Gene Length | 705 bp |
Protein Length | 234 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641685095 |
Product | short chain dehydrogenase |
Protein accession | YP_001812000 |
Protein GI | 172064349 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 0.980591 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGATCG AAGGTGCAGT CGTTTTCGTC ACGGGCGCGA ACCGCGGGCT TGGCCTCGAA TTCGCGAAGC AGGCGCTGGA ACGCGGGGCG CGGAAGGTCT ATGCGGGTGC GCGCGATCCG GCCAGCGTGA CGCTGCCGGG CGTGGTGCCC GTGAAGCTCG ACGTGACCGA TCCGGCGGCG GTCGCCGCGG CCGCTGACGC CGCGCGCGAC GTCACGTTGC TGATCAACAA CGCGGGCATC GCGCGGCTCG GCAGCCTGAC CGACGACGGC GCCGTCGACG CGTTGCGCGA TCACCTCGAA ACCAACGTGT TCGGGATGCT GGCGATGTCG CGCGCATTCG CGGCCACGCT CGCCGGCCAC GGCGGCGGCG CGATCCTGAA CGTGCTGTCC GTCGCGAGCT GGGTGAACCG GCCGATCCTG TCGGGCTACG GCGTGTCGAA GTCGGCCGCA TGGGCGCTGA CCAACGGGCT GCGGCATTCG CTGCGCGAGC AGCGCACGCA GGTGGTGGGG CTGCATGCCG GCTTCATCGA TACGGACCTG ACACGCGGCC TGGACGTGCC GAAGGCGATG CCGGCCGACG TCGTGCGTCA GGCCTACGAC GCGATCGAAT CCGGAGCGGA GGAGGTGGCC ACCGACGACT TCACGCGGCA GGTGAAGGCC ACGCTGTCGG CCGGTGTCTA TCTGGACGAG GCGGCGCCGG TCTGA
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Protein sequence | MKIEGAVVFV TGANRGLGLE FAKQALERGA RKVYAGARDP ASVTLPGVVP VKLDVTDPAA VAAAADAARD VTLLINNAGI ARLGSLTDDG AVDALRDHLE TNVFGMLAMS RAFAATLAGH GGGAILNVLS VASWVNRPIL SGYGVSKSAA WALTNGLRHS LREQRTQVVG LHAGFIDTDL TRGLDVPKAM PADVVRQAYD AIESGAEEVA TDDFTRQVKA TLSAGVYLDE AAPV
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