| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5242 |
|---|
| Symbol | |
|---|
| ID | 6180702 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 2447400 |
|---|
| End bp | 2448869 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641684998 |
|---|
| Product | succinic semialdehyde dehydrogenase |
|---|
| Protein accession | YP_001811903 |
|---|
| Protein GI | 172064252 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01780] succinate-semialdehyde dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.426538 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACGG TTCAGGAAAC CCTGGCACTG AAAGATCCGT CGCTGTTCCG CCAGCAGGCG
TACGTCAACG GCGAATGGCA AGGCGCGGCG AACGGCGAGT CGTTCGAAGT CCGCAACCCG
GCGACCGGCG GCCTGCTCGG CACCGTGCCG GCGATGGGCA CGGCCGAGAC GCGTCACGCG
ATCGAAGCCG CGAACGCCGC ATGGCCGGCG TGGCGCAAGA AGACCGCGAA GGAACGCGCG
GCGATCCTGC GCAAGTGGCA CGACCTGATG ATGGAAAACG CCGACGACCT CGCGCTGATC
CTCACCACCG AGCAGGGCAA GTCGCTGGCC GAGGCGAAGG GCGAGATCGG CTACGCGGCA
TCGTTCCTCG AGTGGTTCGC GGAAGAAGGC AAGCGCGTGT ACGGCGACAC GATCCCGACG
CCGGCGAGCG ACAAGCGCAT CGTCGTGACG AAGGAAGCGA TCGGCGTGTG CGCGGCGATC
ACGCCGTGGA ACTTCCCGGC GGCGATGATC ACCCGCAAGG TCGGCCCGGC GCTCGCGGCG
GGCTGCCCGA TCGTCGTGAA GCCGGCCGAG GCGACGCCGT TCTCCGCGCT CGCGATGGCC
GTGCTGGCCG AGCGTGCGGG CGTGCCGGCC GGCGTGTTCA GTGTCGTCAC GGGCGACCCG
AAGGCGATCG GCGGCGAGCT GACGTCGAAC CCGATCGTGC GCAAGCTGTC GTTCACCGGC
TCGACGCCGG TCGGCCGTCT GCTGATGGCC CAATGCGCGA CGACGGTCAA GAAGGTGTCG
CTGGAGCTTG GTGGCAACGC GCCGTTCATC GTGTTCGACG ATGCCGATCT CGATGCCGCC
GTGCAGGGCG CGATCGCGTC GAAGTACCGC AACAGCGGCC AGACGTGCGT GTGCACGAAC
CGCTTCTACG TGCACGAAGC CGTGTACGAC CAGTTCGCGC AGAAGCTCGC GGCGGCGGTC
GGCCAGCTGA AGGTCGGTCG CGGCACGGAG CCGGGCGTCA CGCAGGGTCC GCTGATCAAC
GAAGCGGCCG TGCTGAAGGT CGAGGCGCAC ATCGAGGACG CGCTCGCGAA GGGCGCGACC
GTCGTGACGG GCGGCAAGCG CCATGCGCTC GGCCACGGCT TCTTCGAGCC GACCGTGCTG
ACGGGCGTCA CGCCGGCGAT GAAGGTCGCT AAGGAAGAGA CGTTCGGGCC GCTTGCGCCG
CTGTTCAAGT TCAGCAGCGA CGACGAGGTG ATCCGCCTCG CGAACGACAC CGAGTTCGGT
CTCGCCGCCT ACTTCTTCAG TCGCGACATC GGCCGCGTGT GGAAGGTCGC CGAAGCGCTC
GAATACGGGA TGGTCGGCGT GAACACGGGC CTGATCTCGA ACGAAGTCGC ACCGTTCGGC
GGCGTCAAGC AGTCGGGCCT CGGCCGCGAA GGCTCACACT ACGGCATCGA CGACTACGTC
GTGATCAAGT ACCTCTGCCT GGCTGTTTGA
|
|---|
| Protein sequence | MSTVQETLAL KDPSLFRQQA YVNGEWQGAA NGESFEVRNP ATGGLLGTVP AMGTAETRHA
IEAANAAWPA WRKKTAKERA AILRKWHDLM MENADDLALI LTTEQGKSLA EAKGEIGYAA
SFLEWFAEEG KRVYGDTIPT PASDKRIVVT KEAIGVCAAI TPWNFPAAMI TRKVGPALAA
GCPIVVKPAE ATPFSALAMA VLAERAGVPA GVFSVVTGDP KAIGGELTSN PIVRKLSFTG
STPVGRLLMA QCATTVKKVS LELGGNAPFI VFDDADLDAA VQGAIASKYR NSGQTCVCTN
RFYVHEAVYD QFAQKLAAAV GQLKVGRGTE PGVTQGPLIN EAAVLKVEAH IEDALAKGAT
VVTGGKRHAL GHGFFEPTVL TGVTPAMKVA KEETFGPLAP LFKFSSDDEV IRLANDTEFG
LAAYFFSRDI GRVWKVAEAL EYGMVGVNTG LISNEVAPFG GVKQSGLGRE GSHYGIDDYV
VIKYLCLAV
|
|---|
| |