Gene BamMC406_5230 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_5230 
Symbol 
ID6180233 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand
Start bp2434309 
End bp2435526 
Gene Length1218 bp 
Protein Length405 aa 
Translation table11 
GC content69% 
IMG OID641684986 
ProductRND family efflux transporter MFP subunit 
Protein accessionYP_001811891 
Protein GI172064240 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.0639393 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCATCC TACGCACCTC CCGTTCCCGA ATCGCCACCG CGGCGATCGT GACGCTCGCC 
GTCGTCGGCC TCGGCACGTT CGGCGCGATG CGCGTGAACG CGAACGCGCC CGAAAAGGCG
GCGGCGCCGC TGCCCGAAGT CGATGTCGCG ACCGTCGTGC CGCAGACCGT CACCGACTGG
CAAAGCTATT CGGGCCGCCT CGAGGCGGTC GAGAAAGTCG ACGTGCGCCC GCAGGTGTCG
GGCACGATCG TCGCGGTGAA CTTCAAGGAC GGCGCGCTCG TGAAGAAAGG CGACGTGCTG
TTCGTGATCG ATCCGCGTCC GTACCAGGCG GAAGTCGACC GTGCCGCGGC ACAGCTCGCC
GGTGCGCAGG CCCGCAACGG CTACGCGCAG AGCGACTGGC AGCGCGCGCA GCGGCTGATC
GGCGACAACG CGATCGCCAA GCGCGACTAC GACGAGAAGC AAAACGCCGC GCGCGAGGCG
AGCGCGAACC TGAAGGCCGC CGAAGCCGCG CTCGAAACGG CACGCATCAA CCTCGGCTAT
ACGCGGATCA CGGCACCGGT CTCGGGCCGC GTGTCGCGCG CGGAAATCAC GCTCGGCAAC
GTCGTGTCGG CCGGTGCGTC GGCCGCGCCG CTGACGACGC TGGTGTCGGT GTCGCCGATC
TACGCATCGT TCGACGCGGA CGAGCAGACC TACCTGCAAT ACATCAACGG CGCGCGCAAC
GGCCGCAAGG TGCCGGTCGA GCTCGGTCTC GCGAACGAAA CCGGCTACTC GCGCAGCGGC
GAGATCGATT CGGTCGACAA CAGGCTCGAC ACGTCGTCCG GGACGATCCG CGTGCGCGCA
CGCTTCGACA ATGCGGACGG TGCGCTCGTG CCCGGCCTCT ACGCGCGCGT GAAGGTGGGC
GGCAGCGCGC CGCACCAGGC GCTGCTCGTC GACGACGCGG CGATCAACAC GGACCAGGAC
AAGAAGTTCG TGTTCGTCGT CGACCAGCAG GGCCGCGTGT CGTATCGGGA AGTGCAGCAG
GGGATGCAGC ACGGCAACCG GCGCGTCATC GTGAGCGGGC TTTCCGCCGG CGACCGCGTG
ATCGTGAACG GCACGCAGCG CGTACGACCC GGCGAGCAGG TGAAGCCGCA CATGGTCCCG
ATGACGGGCG GCGATGCGCC GTCCGCGCCG CTCGCGAGCA CCGCGAAGCC GGCCGCACCG
GCGAAGGCGG ATTCGTAA
 
Protein sequence
MAILRTSRSR IATAAIVTLA VVGLGTFGAM RVNANAPEKA AAPLPEVDVA TVVPQTVTDW 
QSYSGRLEAV EKVDVRPQVS GTIVAVNFKD GALVKKGDVL FVIDPRPYQA EVDRAAAQLA
GAQARNGYAQ SDWQRAQRLI GDNAIAKRDY DEKQNAAREA SANLKAAEAA LETARINLGY
TRITAPVSGR VSRAEITLGN VVSAGASAAP LTTLVSVSPI YASFDADEQT YLQYINGARN
GRKVPVELGL ANETGYSRSG EIDSVDNRLD TSSGTIRVRA RFDNADGALV PGLYARVKVG
GSAPHQALLV DDAAINTDQD KKFVFVVDQQ GRVSYREVQQ GMQHGNRRVI VSGLSAGDRV
IVNGTQRVRP GEQVKPHMVP MTGGDAPSAP LASTAKPAAP AKADS