Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_5230 |
Symbol | |
ID | 6180233 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | - |
Start bp | 2434309 |
End bp | 2435526 |
Gene Length | 1218 bp |
Protein Length | 405 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641684986 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001811891 |
Protein GI | 172064240 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.0639393 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCATCC TACGCACCTC CCGTTCCCGA ATCGCCACCG CGGCGATCGT GACGCTCGCC GTCGTCGGCC TCGGCACGTT CGGCGCGATG CGCGTGAACG CGAACGCGCC CGAAAAGGCG GCGGCGCCGC TGCCCGAAGT CGATGTCGCG ACCGTCGTGC CGCAGACCGT CACCGACTGG CAAAGCTATT CGGGCCGCCT CGAGGCGGTC GAGAAAGTCG ACGTGCGCCC GCAGGTGTCG GGCACGATCG TCGCGGTGAA CTTCAAGGAC GGCGCGCTCG TGAAGAAAGG CGACGTGCTG TTCGTGATCG ATCCGCGTCC GTACCAGGCG GAAGTCGACC GTGCCGCGGC ACAGCTCGCC GGTGCGCAGG CCCGCAACGG CTACGCGCAG AGCGACTGGC AGCGCGCGCA GCGGCTGATC GGCGACAACG CGATCGCCAA GCGCGACTAC GACGAGAAGC AAAACGCCGC GCGCGAGGCG AGCGCGAACC TGAAGGCCGC CGAAGCCGCG CTCGAAACGG CACGCATCAA CCTCGGCTAT ACGCGGATCA CGGCACCGGT CTCGGGCCGC GTGTCGCGCG CGGAAATCAC GCTCGGCAAC GTCGTGTCGG CCGGTGCGTC GGCCGCGCCG CTGACGACGC TGGTGTCGGT GTCGCCGATC TACGCATCGT TCGACGCGGA CGAGCAGACC TACCTGCAAT ACATCAACGG CGCGCGCAAC GGCCGCAAGG TGCCGGTCGA GCTCGGTCTC GCGAACGAAA CCGGCTACTC GCGCAGCGGC GAGATCGATT CGGTCGACAA CAGGCTCGAC ACGTCGTCCG GGACGATCCG CGTGCGCGCA CGCTTCGACA ATGCGGACGG TGCGCTCGTG CCCGGCCTCT ACGCGCGCGT GAAGGTGGGC GGCAGCGCGC CGCACCAGGC GCTGCTCGTC GACGACGCGG CGATCAACAC GGACCAGGAC AAGAAGTTCG TGTTCGTCGT CGACCAGCAG GGCCGCGTGT CGTATCGGGA AGTGCAGCAG GGGATGCAGC ACGGCAACCG GCGCGTCATC GTGAGCGGGC TTTCCGCCGG CGACCGCGTG ATCGTGAACG GCACGCAGCG CGTACGACCC GGCGAGCAGG TGAAGCCGCA CATGGTCCCG ATGACGGGCG GCGATGCGCC GTCCGCGCCG CTCGCGAGCA CCGCGAAGCC GGCCGCACCG GCGAAGGCGG ATTCGTAA
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Protein sequence | MAILRTSRSR IATAAIVTLA VVGLGTFGAM RVNANAPEKA AAPLPEVDVA TVVPQTVTDW QSYSGRLEAV EKVDVRPQVS GTIVAVNFKD GALVKKGDVL FVIDPRPYQA EVDRAAAQLA GAQARNGYAQ SDWQRAQRLI GDNAIAKRDY DEKQNAAREA SANLKAAEAA LETARINLGY TRITAPVSGR VSRAEITLGN VVSAGASAAP LTTLVSVSPI YASFDADEQT YLQYINGARN GRKVPVELGL ANETGYSRSG EIDSVDNRLD TSSGTIRVRA RFDNADGALV PGLYARVKVG GSAPHQALLV DDAAINTDQD KKFVFVVDQQ GRVSYREVQQ GMQHGNRRVI VSGLSAGDRV IVNGTQRVRP GEQVKPHMVP MTGGDAPSAP LASTAKPAAP AKADS
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