Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_5192 |
Symbol | |
ID | 6179880 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | - |
Start bp | 2389983 |
End bp | 2390837 |
Gene Length | 855 bp |
Protein Length | 284 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641684948 |
Product | shikimate 5-dehydrogenase |
Protein accession | YP_001811853 |
Protein GI | 172064202 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 0.746305 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCGCC CGTCTTTTCT GATCGGCCTG ATCGGCCAGG GTATCGGCGG TTCGCTGTCG CCCGCGATGC ATGAGGAAGA GGGATTCCGC CAGGGATTCG GCTACGTATA CCGGCGCATC GATCTCGACG CGCTCGGCCT GACCGTCGAC GCGCTGCCGC AACTGCTCGA GGCCGCGCAG CGGATGGGCT ACAACGGGCT GAACATCACG CACCCGTGCA AGCAGCGCGT GATCGAGCAC CTCGACGCGC TGTCGGACGA CGCGCGCGCG CTCGGCGCGG TGAACACCGT GCTGTTCAAG GACGGCAAGC GGATCGGCCA CAACACCGAC TGGTCGGGTT TCGCGAAGTC GTTCCGCCGC GGGCTTCCCG ACGCGTCGCT CGAGCGCGTC GTCCAGCTCG GTGCGGGTGG GGCCGGCGCG GCCGTCGCAC ATGCGGCGCT GCAGATGGGC GCCGCCGAAT TGACGATTTT CGACGTCGAC GGCACGCGTG CCGACACGCT CGCGAGCGAA CTGCAGCAGC GCTTCCCGGT CGCCCGGGTC ACGCCGGGCA GCGATCGCGC GGCCGCGATG CGCGCCGCGA CGGGCCTGAT CCATGCAACG CCGACCGGCA TGACCAAGCA TCCGGGGCTG CCGCTGCCGG CCGAACTGCT CCATGCGGGA ATGTGGGTGG CCGACATCGT GTATTTCCCG CTCGAAACCG AACTGATTCG CGCGGCACGC GCGGCCGGCT GCGCGACGCT GCCGGGCGGC GGAATGGCCG TGTACCAGGC AGTCGACGCG TTCGAGATCT TCACCGGACG TACGCCGGAC GACGAGCGGA TGTTCGAGCA CTTTCAGTCG CTCGTCGCGC GCTGA
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Protein sequence | MSRPSFLIGL IGQGIGGSLS PAMHEEEGFR QGFGYVYRRI DLDALGLTVD ALPQLLEAAQ RMGYNGLNIT HPCKQRVIEH LDALSDDARA LGAVNTVLFK DGKRIGHNTD WSGFAKSFRR GLPDASLERV VQLGAGGAGA AVAHAALQMG AAELTIFDVD GTRADTLASE LQQRFPVARV TPGSDRAAAM RAATGLIHAT PTGMTKHPGL PLPAELLHAG MWVADIVYFP LETELIRAAR AAGCATLPGG GMAVYQAVDA FEIFTGRTPD DERMFEHFQS LVAR
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