Gene BamMC406_5189 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_5189 
Symbol 
ID6179462 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand- 
Start bp2386045 
End bp2387133 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content65% 
IMG OID641684945 
Product2-aminoethylphosphonate ABC transporter, 2-aminoethylphosphonate binding protein 
Protein accessionYP_001811850 
Protein GI172064199 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG4143] ABC-type thiamine transport system, periplasmic component 
TIGRFAM ID[TIGR01254] ABC transporter periplasmic binding protein, thiB subfamily
[TIGR03227] 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.746305 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACTGC AGAATTCCTC GCGCGCCGCT GCCGGCGCGT TCCGCAAGCT CGCGCTGGCT 
GCCGGCGCCG CCGGCCTGAT GGGCGCCGCA TTGCCCGCGC ATGCGGCGAA CGCGGTCGTG 
CTGTATACGG CGGACGGTCT CGAGAACCTC TATCGCGATG TGCTGCCGGC CTTCGAGAAG 
AAGGAAGGCG TCAAGGTCAA CATCGTGACG GCGGGCAGCG GCGAGGTCGT CAACCGCGCG 
AACATCGAGA AGAACTCGCC GAAGGCGGAC GTGATCGTCA CGCTGCCGCC GTTCATCCAG 
CAAGCCGGCC AGATGGGCCT GCTGCAGCCG TACCAGAGCG TGAACTACAA GAACGTGCCG 
GCGATCGCGA AGGCGGAAGA CGGTACGTGG GCGACCTTCG TGAACAACTA CTTCTCGTTC 
GCGATCAACC CGGACGTCGT GAAGAACCAG CCGAAGACGT TCGCCGACCT GCTGTCGCCG 
AGCTATGCCG GCAAGGTGGC GTACTCGAAC CCGGCGACCG CCGGCGACGG GATGGCCGTG 
CTGATCCTGA CGACCTCGCT GATGGGCGAG GACAAGGCGT TCGACTACCT CGCGAAACTG 
TCGCAGAGCG TGAAGTTCCA CACGAAGGGC ACCGGCTACC TGAACGTGCT GCTGTCGCGC 
AACGAGATCA GCGTCGCGAA CGGCGACCTG CAGATGGACC TCGACGACGC CGAGCACGGC 
GCGCTGTCGG TCAAGCCGAT CTTCCTGGCC GCGAAGGACG GCGACCAGCC GACCACGTTC 
CAGCTGCCGT ACGGCATCGG TCTGATCAAG AGCGGCCCGA ACCAGGACGT CGGCAAGAAG 
CTGATCGACT ACCTGATGTC GACGGAAGTG CAGTCGAAGG TGCCGGACAT GTATGGCATC 
CCGGGCCGCA CCGACGTTCC GCTGGCCGGC AAGAACGGCG AAGCGGTCAA GAAGGCGATC 
GCGGGCGTGA AGCTGATTCC GGTCGACTGG AGCCAGGTGA TGGCGAAGAA GCCGGTGTGG 
ATCGAGCGCT GGAAGAAGGA CGTGATCGGC AGCTCGGGCA AGCAGCTCGA CGTCGTCAAG 
CCGAAGTGA
 
Protein sequence
MTLQNSSRAA AGAFRKLALA AGAAGLMGAA LPAHAANAVV LYTADGLENL YRDVLPAFEK 
KEGVKVNIVT AGSGEVVNRA NIEKNSPKAD VIVTLPPFIQ QAGQMGLLQP YQSVNYKNVP 
AIAKAEDGTW ATFVNNYFSF AINPDVVKNQ PKTFADLLSP SYAGKVAYSN PATAGDGMAV 
LILTTSLMGE DKAFDYLAKL SQSVKFHTKG TGYLNVLLSR NEISVANGDL QMDLDDAEHG 
ALSVKPIFLA AKDGDQPTTF QLPYGIGLIK SGPNQDVGKK LIDYLMSTEV QSKVPDMYGI 
PGRTDVPLAG KNGEAVKKAI AGVKLIPVDW SQVMAKKPVW IERWKKDVIG SSGKQLDVVK 
PK