| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5172 |
|---|
| Symbol | |
|---|
| ID | 6181079 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 2360101 |
|---|
| End bp | 2361012 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641684923 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001811833 |
|---|
| Protein GI | 172064182 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.106584 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTGGGGA ATCTGTCGAC CCTCGATCTG CGGTTGATCC GCGTGTTTCT CGCGGTCACG
GACGCGGGCG GCGTGTCGGC CGCGCAGGCG ATGCTGAACG TCGGCCAGTC GACGATCAGC
GCGCAATTGT CGTCGCTCGA GACACGGCTC GGCTACCGGC TCTGCGAGCG CGGCCGCAGC
GGCTTCCGGC TCACGCCGAA GGGCGAGCGG TTCCATGCGA TGAGCCGCAA GCTGCTCGCG
GCGCTCGACG AATTCGGGAT GGCGGCGCGG CACATGGACC GCCAACTGGT CGGCACGCTG
AACATCGGCC TGATCGGCCA TACGCCGATC AGCCAGAACG CGCGTATCGC CGAGGCGATC
GCCGCGTTCC GCACGCGCGA CCAGGCCGTG CGCTTCTCGA TCTCGGTGCG CCCGCCGGGC
GATCTCGAGG AGAAGCTGCT GAGCGACGAG ATCCAGATTG CCGTCGGCTA TTTCTGGCAT
CGCGTGCCGT CGCTGCATTA CACGCCGCTG TTCATCGAGC GGCAGATCGC ATATTGCGGG
CGCGGCCATC CGCTATTCGA CGCGGCCGGC GCGCTGACGC CGGCCGACGT CGCGGGATTC
GAGTGGGCGT GGCGCTCGTA TCCGCTACCG GAGGCGCAGA TGTCGACGAC GCCCGACCGC
GTGACCGCGA CCGCCGACAA CATGGAAGCC GTCGCGCTGC TGATCCTGTC GGGCCATCAC
CTCGGTTATC TGCCGCAGCA CTTCGCGGCG CCGTACGTCG CGCAGGGGCT GCTCGCGCCG
CTCAATCCCG AGCAGCTGCG CTACGACGTC ACGTTCCATA TGGTCGTCGC GCGCGACGGG
CGCGGCAATC CGCTCGTGGA AGCCTTTCTC GAGGATCTCG AGCACGCGCA CCAGGCGCCC
GACGCCGTGT GA
|
|---|
| Protein sequence | MLGNLSTLDL RLIRVFLAVT DAGGVSAAQA MLNVGQSTIS AQLSSLETRL GYRLCERGRS
GFRLTPKGER FHAMSRKLLA ALDEFGMAAR HMDRQLVGTL NIGLIGHTPI SQNARIAEAI
AAFRTRDQAV RFSISVRPPG DLEEKLLSDE IQIAVGYFWH RVPSLHYTPL FIERQIAYCG
RGHPLFDAAG ALTPADVAGF EWAWRSYPLP EAQMSTTPDR VTATADNMEA VALLILSGHH
LGYLPQHFAA PYVAQGLLAP LNPEQLRYDV TFHMVVARDG RGNPLVEAFL EDLEHAHQAP
DAV
|
|---|
| |