Gene BamMC406_5144 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_5144 
Symbol 
ID6179583 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand- 
Start bp2317266 
End bp2317904 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content69% 
IMG OID641684896 
ProductFMN-binding negative transcriptional regulator 
Protein accessionYP_001811806 
Protein GI172064155 
COG category[K] Transcription 
COG ID[COG2808] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.081926 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTATGTCC CCGCCGATTT CGCCGAATCC CGCCCCGACG CGCTGCGCGA ACTGATCGTC 
CAGCATCCGT TCGGCAGCCT CGTCACGCAC GGCAAGGGCG GGCTCGACGC GAACCACATT 
CCGTTCGAAC TGCTGCCGGG CGACGGCGGC CTCGGCGAGC TGCATGCGCA CGTCGCGCGC 
GCGAATCCGG TCTGGCAGGA GGTCGTGAAC GGCGACGAGG TGCTCGTGAT CTTCCGTGCC 
GGCGATGCGT ACATCTCGCC GAACTGGTAC CCGAGCAAGC ACGTCGCGCA CCGGCAGGTG 
CCGACGTGGA ACTACGTGGT CGTGCATGCG CACGGCCGCA TCACGGTGCG CGACGACGAG 
AAGTTCGTGC GCGGCGTGGT CGCGCGGCTG ACCCGCACGC ACGAGGCATC GCAGCCGGCG 
CCGTGGAAGA TGGCCGACGC GCCGAAGGAC TATCTCGACA CGATGCTGCA GTCGATCGTC 
GGGCTGCAGA TCGAGATCAC GCGGCTCGTC GGCAAGCGCA AGCTCGGGCA GAACAAGGCG 
GTCGACGATA TCCGCGGCGC GGGTGACGCG CTGATCGCGG GCGGGCAGCT CGCGATCGGC 
GAGGCGATGC TGGCGGAGGC GGACGCGAAG CTCAAGTGA
 
Protein sequence
MYVPADFAES RPDALRELIV QHPFGSLVTH GKGGLDANHI PFELLPGDGG LGELHAHVAR 
ANPVWQEVVN GDEVLVIFRA GDAYISPNWY PSKHVAHRQV PTWNYVVVHA HGRITVRDDE 
KFVRGVVARL TRTHEASQPA PWKMADAPKD YLDTMLQSIV GLQIEITRLV GKRKLGQNKA 
VDDIRGAGDA LIAGGQLAIG EAMLAEADAK LK