| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5137 |
|---|
| Symbol | |
|---|
| ID | 6180083 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 2311148 |
|---|
| End bp | 2312341 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641684889 |
|---|
| Product | porin |
|---|
| Protein accession | YP_001811799 |
|---|
| Protein GI | 172064148 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.918884 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAGC AACTGATCGC AGCACCGCTG CTGCTCTCGC TCGCGGGCAT TGCCTCCGCG
CAAAGCTCCG TCACGCTGTA CGGCATCGTC GACGCAGGCG TGACCTATCG CAGCAACGAG
CGGGTCGGCT CGCCGGGCGC CTACACCGGG CATTCGGAAG TTGGCCTGAC CACCGGCAAC
CTGTCGGGCA GCCGCTGGGG CATCAAGGGT TCCGAGGATC TCGGCGGCGG AATGCGCGCG
CTGTTCGTGC TCGAGAACGG CTTCGACGTG ACCAACGGCA CGTCGGGGCA GGGCGGCCGT
CAGTTCGGCC GCCAGGCGTT CGTCGGCATC GGCAGCATTC GCTACGGCAC GGTCACGCTC
GGCCGCCAGT ACACGTCGCT CAACGACTTC GTGAGCCCGG TCGCCCCGTC GTCGTTCATC
GGCGGGTTCG GCGCGCATCC GGGCGACATC GACGATCTCG ACCAGACCGC GCGTGTGGAC
AGCTCGATCA AGTACACGAG CGCGAACTAC GCGGGCTTCA CGTTCGGCGC GCTGTATGGC
TTCGGCAGCC AGCCGGGCAG CATGAAGCAG CGCAACACGT GGAGCGTCGG CGCCGCATAC
GCGGCGGGGC CGCTGCGCGT GGGCGTCGGC TACGAGCGCT CGGACAACAG CAAGACGGGC
GCGACCGATC CGACGGCCGG CAAATGGCAG AGCACCGACG ACGGGCTGTT CAACTCGTCG
ATCAACGAAG GCTATGCGAG CGCGCAGTCG CAGCAGGTGA TCGCGACCGG CGCGACGTAC
AACTTCGGCC CGGCCGTCGT CGGCGTGAAC TACAGCAACA TTCAGTATCG CAGCGGCGCG
CAGTCGCTGT TCAGCGGCCA TGCGACGTTC AACGTCGCGG GCGTGTTCAC GCGCTGGAAC
GTGCAGCCGC AGACCCAGCT GTTCGCCGGC TACAGCTACA CGCGCGGCAG CGACGTCGAC
GGCATCGACG ACCGCGCGCA ATATCACAAC GTCACGCTCG GCGCGGTCTA CGACCTGTCG
AAGCGCACCA GCGTGTACCT GCTCGGCGCG TACCAGCGTG CGTCCGGCAC GACGCTCGAC
GCACTCGGCC GGCCGGTGGC CGCGACCGCG GCGGTGTCGG ACAAGGCGAA CGGCCACTCG
TCCGATTCGC GTTCGCAGGC GATCGTCAGC CTCGGCCTGC GCCAGAAGTT CTGA
|
|---|
| Protein sequence | MNKQLIAAPL LLSLAGIASA QSSVTLYGIV DAGVTYRSNE RVGSPGAYTG HSEVGLTTGN
LSGSRWGIKG SEDLGGGMRA LFVLENGFDV TNGTSGQGGR QFGRQAFVGI GSIRYGTVTL
GRQYTSLNDF VSPVAPSSFI GGFGAHPGDI DDLDQTARVD SSIKYTSANY AGFTFGALYG
FGSQPGSMKQ RNTWSVGAAY AAGPLRVGVG YERSDNSKTG ATDPTAGKWQ STDDGLFNSS
INEGYASAQS QQVIATGATY NFGPAVVGVN YSNIQYRSGA QSLFSGHATF NVAGVFTRWN
VQPQTQLFAG YSYTRGSDVD GIDDRAQYHN VTLGAVYDLS KRTSVYLLGA YQRASGTTLD
ALGRPVAATA AVSDKANGHS SDSRSQAIVS LGLRQKF
|
|---|
| |