Gene BamMC406_5006 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_5006 
Symbol 
ID6179896 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand
Start bp2162469 
End bp2163719 
Gene Length1251 bp 
Protein Length416 aa 
Translation table11 
GC content71% 
IMG OID641684758 
Productmajor facilitator transporter 
Protein accessionYP_001811668 
Protein GI172064017 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.641572 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCACCC CGTTACCCGA ATCCAGCACC GCATCCACGT TACCCGCCAA CCTGTTTCGC 
CACGCACCGT TCCAGCGCTT CTGGGGCACG CGCGTGATGT CGTCGCTGGC GTTCCAGATC
CTGTCGGTCG CGATCGGCTG GTATGTCTAT ACGCTCACGC ACAGCGCGTT CGCGCTCGGC
CTCGTCGGCC TCGCGCAGTT CGTGCCGATG TTCGCGCTGA CGCTCGTCGT CGGGCAGGTG
GCCGACCGCT ACGACCGCCG ACGCATCGCG ACGATCTGCC AGAGCGTCGA GGCGCTGGCC
GCCGGCGTGT TCCTGTTCGG CGCGGCGAAA GGCGGGCTCA CCGAGCCGGC CGTGTATGCG
CTCGCGGCGA TCGTCGGCAC CGCGCGTGCG TTCGAATCGC CGTCGGTGTC GTCGTTGCTG
CCGGCCGTCG TGCCGCGCAG CGACCTGCCG CGCGCGACCG CGCTGTCGAC GTCCGCGAAC
CAGGCCGCGC AGATTCTCGG GCCCGCGTTC GGCGGGCTGC TGTATGGCAT CGGTGCGCCC
GCCGCGTTCG GCACGAGCGT GGTCGCATTC GCGATCGCGG CGGTGCTGAG CGGCACGATT
CCGCTGCGCA GCGCGCCGCC GGCACGCGAG CCGGTCACGC TGCGTTCGGT GTTCTCGGGC
ATCGCGTTCA TCCGGCGCGA ACCGGCGATC CTCGGCGCGC TGTCGCTCGA CCTGTTCGCG
GTGCTGTTCG GGGGTGCCAC CGCGCTCCTG CCGATCTACG CACGCGACAT CCTGCAGGTC
GGACCGTGGG GGCTCGGCGC GTTGCGCGCG GCGCCGGCGG TCGGTGCGCT CGCGGGGACG
CTGTGGCTCA CGCGTTTTCC GCTGAAGGGG CGGCCGGGCC GCGCGATGTT CGGCGGCGTG
ATCGCATTCG GCATCGCGAC GATCGTGTTC GGGCTGTCGA GGCATTTCGC GGTGTCGCTC
ATCGCGCTGG CGGCGTTGGG CGCGTCGGAC GTGGTGAGCG TCGTCGTGCG CCTGTCGCTC
GTGCAGCTGC GTACGCCCGA CGACATGCTC GGGCGCGTGA GCGCGGTCAA CTCGTTGTTC
ATCGGCACGT CGAACCAGCT CGGCGAATTC GAATCGGGCG TGACGGCTGC ATGGTGGGGC
GCGCCGGCGG CGATCGTGGT CGGCGGCGCG GCGACGATCG CCGTGGCGCT CACGTGGATG
CGCCTGTTTC CGACGTTGCG GAACATGAGA TCGCTGGAGC GCGATCATTG A
 
Protein sequence
MTTPLPESST ASTLPANLFR HAPFQRFWGT RVMSSLAFQI LSVAIGWYVY TLTHSAFALG 
LVGLAQFVPM FALTLVVGQV ADRYDRRRIA TICQSVEALA AGVFLFGAAK GGLTEPAVYA
LAAIVGTARA FESPSVSSLL PAVVPRSDLP RATALSTSAN QAAQILGPAF GGLLYGIGAP
AAFGTSVVAF AIAAVLSGTI PLRSAPPARE PVTLRSVFSG IAFIRREPAI LGALSLDLFA
VLFGGATALL PIYARDILQV GPWGLGALRA APAVGALAGT LWLTRFPLKG RPGRAMFGGV
IAFGIATIVF GLSRHFAVSL IALAALGASD VVSVVVRLSL VQLRTPDDML GRVSAVNSLF
IGTSNQLGEF ESGVTAAWWG APAAIVVGGA ATIAVALTWM RLFPTLRNMR SLERDH