Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_4951 |
Symbol | |
ID | 6179804 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | - |
Start bp | 2097457 |
End bp | 2101944 |
Gene Length | 4488 bp |
Protein Length | 1495 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 641684704 |
Product | YD repeat-containing protein |
Protein accession | YP_001811614 |
Protein GI | 172063963 |
COG category | [M] Cell wall/membrane/envelope biogenesis [S] Function unknown |
COG ID | [COG3209] Rhs family protein [COG4104] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.746977 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGGACA CGCCGAATTA CAACGAGCCC AGCGGCAGCG CACAAGAACG TCTCGATCAG ATCGCCAAGC TGGAAGACGG TGAAGCCGCC AAAGCGGCCG AGCAGCCGTT TTACGAGAAT CTCAACTATG GGATGCTCGG TGCCGATGCA GGCCTGACCG CGATTGAGGG GACCGCCGCC GGGTTGGGTG CGGCGGGTAC GGCGTTGGCA GGCGGTGCAA CTGGTGGAGC GGCATTGGGC GCAGGTGCGG TCGCCGCGGG TACGGTGATG CTGCCGCTCG CGATTGCAGT CGGCGGAGCT TGGGCGCTCG ACAAAGTCGG TGTTACCGGC TGGCTCTCAA AGGAGTTTAC GCAGGTCGGT GACGCACTTG GCCTCACAAT CGGCCGCGGC GATCCACACC CCGCATGCAT TGGCGACCGG ATTGCACACT CGTCGGGCTT CATGGGAATC CTCGCCGGTA TCGCCGTGGG GGTCGCGATC GGCGTGGCGG TGGCAGCCAC CGTGGCGACG GGAGGACTCG CCGGGGCGTT GATCGTCGGG GCGTGCTTGG CGGGCGGCCT GACTCTCGGT GGCGCACTTG CGTCTGCCAG CCAAAGTATG GGCAGTAACT GTGGTGAGAT TGTCACCGGC TCGGGCGATG TGTACTTTGA AGGCAAAAAG GTGGCGCGCG TCACGGACCT GGTGAAATGC GATCACCATT CCGGCGTGCC GCAGCCACTC GTCGATGGCA GCAAGACAGT GTTCGTCAAC GGCCTGCCGC TGGTACGGAT CGGTCACGAG ACTCACTGTA GCGGCAAGGT CAATTCGGGG CGCAACAGTA TCTGGATCGA CAAGACGACT GGGCACTATG GCCCGAAGAA CCCGGAGTTG ACCGCGACTC AGGAATTCCT GGCGGGGTTG CTCGGCGGGA TTGTAGGCGG CGGAGTCGGA AAATTTGCCG GCAAGGGGAT GCGCGAAAAA TTCAGGCCGG AGCCGACCCG GTCCGCTGAA CAGACGGGCA TCAGGGATGA GAACCGACCG AAGTGCAAGG ATCCGGTTGA TCCGGTATCC GGTGAAATGC TGGAAATCCG CATGGACCTC GCCATTCCCG GCGTCCTGCC GCTTGAGTTC AAACGACGCT ATCGGACTCG GTCGGACGAT CATGGATTGC TCGGTCACCG CTGGTCGGAC AACTGGTCGC AGCATTTGAC ATTCGGCGGT GGTCGCTTCG TCAGATTTCA CGATGGAGCG GGTCTTGCGA TCGGCTTCGA CGCGCCGGAC ATGGCGCTCA ACGGCATCAA CTTGCGCGAA CCGCGCTATC GGCTGGTCGG AAGCCGACTT GAACCGCGGA TCTTCGATCG CGATACGCGG CAACTGCGTA TTTTCACGCC TCTTATCGAC GGAGGGTCTT CGCGCCTCGA GCGGATCGAG GACCTCGACG GTAACGCAAT CGTTCTTTCC TACGATCCTG CTGGCCGTTT GAGTGGCATG GCCCATAGCG ATGGCTATCG GCTTGAGATT ACCTATCCCG GGCGCGACCG GCGGCTGCAA CGGATCGTCC TCCACGATGC GGACGGGAGT TTCCGAACAC TCGTGGACTA CGACTACCAG AACGGCATGC TTACCCACGT GGCGAGCTTC CAGTTTGGGC AGTTCCATTA CGCGTACGAT GCGCACGGCT GGATGACCCA ATGGCGGGAT ACTGACCAGA CCGAAGTCCG ATATCAATAC GACACCGCCG GCCGTGTAGT CGAGACCGGT ACACAGCAGG GCTATCACAC GGGCCGGTTC ATCTACGAAG CCGGCCGCAC TCGCGTGATC GATGTCGACG GCGAATGGAC CTACAACTAT GACGACGAAG GTCTTGTAAC GGCCGAAACC GATCCGCTTG GCCATTGCAC TCGCTCGGAA TGGGAGCTCG GTCGTTTGAT GGCACGGACC GATCCGCTTG GACGACGGAC CGACTATCGC TATGGCGATC ACGGTCAGTT GATTTCGATA GCTGACGTGT CAGGGCGAGC GACCCGGCTG GAATATGATG CCGAGCAGCG CTTCACCGGC GCTACGCTGC CCGATGGTAG GCGGATCAAG CTCGACTACG ATCATCGGAG TCGATTAATT TCGCGCACCG AGCCGGATGG CACCACGACG ACCTACCGCT ACGGATCGAA CGGTGAGCTG TTGCGCATCG TTGTCGGTGA CCGCGAGACG CGCCTCGACT ACGACGAGCG GTTACGACTT GCCGTCATCG AACTGCCGAC CGGTGCGCGC TTCCGGCGCA AGATCGACGT GTTGGGCCGG GTGCTGCAGG AAACGTCGCC CGATGGCCAT GTGACCCGCT TCGACTATGC CGATGGACCT GACAATCCGC GAGGTCTGCT GAGCGCGGTT ACGCGTCCCG ATGGCTCTGT GTGGCGAACC CGATACAACA GCGAGGGTCT GCCGGTCGAA TGGACCGATC CGCTCGGCCG TACGATTCAG CGAGCGTATG GTCCGTTTGA TTTGCTCACG GCGTCGATCG ACGCGGCGGG ACATGCCACG CGTTTCGAGT ACGACCACGC GACCCGTTTG ACGAAGGTCA TCAACGCCCT GGGTGAATCG TACACATACT GCTACGACGC GGCCGGTCGT CTCGTGGAAG AGATTGATTG GGGAGGCCGC GAGACTCGGT ACGAGCGCGA TCCTGCTGGT CGCCTGATAA CCAAGACGTT GCCGGACGGT GGTCAGTGGC GCTATTCGTA CGATGCGTAC GATAGGCTCG TCCAGGTAGA CGCGGGTGAC GTGGGGCTTG CCTACCGTTA CGACGCGGCC GGGCGACTGG CATCGGCGGA AGTTCGAGGC GAGCACCCTC ACGTGACCCG CTTTGCTTAC GATAGGAACG GACGGGTGAT CGGCGAGGAT CAGCATGGCG AACTGTTGCG GCACGTCTAC GATCCTGCTG GACAGCGGCG CGTGCGGATG ACGCCTCGTC GGGAAACGGA GTATGCATAT GATGCGTTGG GTGCCGTGAC ACAGGTGGGC GGCCTAACGA TTCAGCGCGA CAGCCTGGGA CGGGAGATCG GTCGGCGAGC GGGGGAGTTT GTTGCGCAGC AAGACTACGA CACCCTCGGC CGAATTCGCC GACAAATCGC GGGCCCTACC GTAGCGTTCG ACGCCTTGCA AACCGATCCA GCCCGTGCGT TCGAGCAATT GACGCGGCAG GTCTATCACT ACGACGCGGC CGGACAACTG GAGCGGATCG ATACCGACGC CGATAGGCTC ACATACCGGC GTGATGCACG TGGCCAGATC GTCTCAGTGG AAAGTCTGCT ACAGACTGCC GAGCACTTCC GTTACGACGC GGTGATGAAC ATTGCCGCGC ATGGGCGGCA AGCTCCCGTG GATACGCATC ATTACGGCCG AGGGGGCTTG CCGGAGCGAA TCGGTTATGC GCGCTATCGG TACGACGCAC GCGGCCGCAC AATCGAGAAG ACCCTCGAAC AGCCCGGGTT TCGGCCGAAG ACGTGGCAAT ACACGTGGGA TGGCCTCAAC CGGATCGTAA AGGTCGTGAC ACCCGACCGT GGCGTTTGGC TATACCGCTA CGATGCCTTC CATCGCCGGA TCGAGAAGCA GCAACTCGGC GGTCGCGAAG CAGTGAAGTT GCTCTGGGAC GGTTCGACGC TAGCCGAGCG CTGGATTGAG CAGCGGGACG GTACGACGGG ACAGGTGACG ACGTGGCATA TCGAGCCAGG AAGCTTCTCC CCCTTGGCAC AGGAGACAAA TGATGGTCTC TACCCTATCT TGACCGATCA GGTTGGTCGG GCGAAGGCGG TATTCGACGT GCGTGGCAAG ACGGTCTTCA AAGTGTCTCA TACGCTCTGG GGGAGAGTGA TGCAGGTACG AGGCGCCGCT AACGACGACG ATGCCGTATC GATCGATGCG ACATTGAGGT TTCCGGGACA ATGGTGTGAC GAGGAAACCG GCCTGCACTA CAACCTGCAT CGCTATTACG ACCCGGACTC AGCGCAGTAC CTGAGCGTTG ACCCGCTCGG ACTTGCAGGC GGATTCCGGA CCCAGGGCTA TGTTCATGAA CCCAGCCAGT GGGTCGATCC GTTCGGTTTA CAGCAATGCC CGGAACGAGA AGTCAATGGA ACGAAGATAT ACGGCAAGGG GCAAAAGGAC GGAACACCTG GACACGACCA GTTCTCAGAA GTGGTCGCTA ACAAGCTCGC GATGAGTGGG AAATTCAAGG AAATCTATCT GAACCGATCC TACAATTTTG CGAGCGACAA TGCTGTTTCG GCGCGGCGCC CCGATATTAT GGCTGTAGAC ATTAATGGGA GAGTGCATGC CATCGAAATG GCGTCCCGGA CCGATATGGG TGCGAAATTG CGAACGCTAA CGACGCGAAA CTATGACGCG ATGCAAAATC TTCCGCCGAA TGCGCGAGGG GATATTCTTG TGTTTGAACA TCCGTATGAT GCGCAATCGA TAAAGACTGA TCTGGATAAT TTAATATCGG GAATCTGA
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Protein sequence | MSDTPNYNEP SGSAQERLDQ IAKLEDGEAA KAAEQPFYEN LNYGMLGADA GLTAIEGTAA GLGAAGTALA GGATGGAALG AGAVAAGTVM LPLAIAVGGA WALDKVGVTG WLSKEFTQVG DALGLTIGRG DPHPACIGDR IAHSSGFMGI LAGIAVGVAI GVAVAATVAT GGLAGALIVG ACLAGGLTLG GALASASQSM GSNCGEIVTG SGDVYFEGKK VARVTDLVKC DHHSGVPQPL VDGSKTVFVN GLPLVRIGHE THCSGKVNSG RNSIWIDKTT GHYGPKNPEL TATQEFLAGL LGGIVGGGVG KFAGKGMREK FRPEPTRSAE QTGIRDENRP KCKDPVDPVS GEMLEIRMDL AIPGVLPLEF KRRYRTRSDD HGLLGHRWSD NWSQHLTFGG GRFVRFHDGA GLAIGFDAPD MALNGINLRE PRYRLVGSRL EPRIFDRDTR QLRIFTPLID GGSSRLERIE DLDGNAIVLS YDPAGRLSGM AHSDGYRLEI TYPGRDRRLQ RIVLHDADGS FRTLVDYDYQ NGMLTHVASF QFGQFHYAYD AHGWMTQWRD TDQTEVRYQY DTAGRVVETG TQQGYHTGRF IYEAGRTRVI DVDGEWTYNY DDEGLVTAET DPLGHCTRSE WELGRLMART DPLGRRTDYR YGDHGQLISI ADVSGRATRL EYDAEQRFTG ATLPDGRRIK LDYDHRSRLI SRTEPDGTTT TYRYGSNGEL LRIVVGDRET RLDYDERLRL AVIELPTGAR FRRKIDVLGR VLQETSPDGH VTRFDYADGP DNPRGLLSAV TRPDGSVWRT RYNSEGLPVE WTDPLGRTIQ RAYGPFDLLT ASIDAAGHAT RFEYDHATRL TKVINALGES YTYCYDAAGR LVEEIDWGGR ETRYERDPAG RLITKTLPDG GQWRYSYDAY DRLVQVDAGD VGLAYRYDAA GRLASAEVRG EHPHVTRFAY DRNGRVIGED QHGELLRHVY DPAGQRRVRM TPRRETEYAY DALGAVTQVG GLTIQRDSLG REIGRRAGEF VAQQDYDTLG RIRRQIAGPT VAFDALQTDP ARAFEQLTRQ VYHYDAAGQL ERIDTDADRL TYRRDARGQI VSVESLLQTA EHFRYDAVMN IAAHGRQAPV DTHHYGRGGL PERIGYARYR YDARGRTIEK TLEQPGFRPK TWQYTWDGLN RIVKVVTPDR GVWLYRYDAF HRRIEKQQLG GREAVKLLWD GSTLAERWIE QRDGTTGQVT TWHIEPGSFS PLAQETNDGL YPILTDQVGR AKAVFDVRGK TVFKVSHTLW GRVMQVRGAA NDDDAVSIDA TLRFPGQWCD EETGLHYNLH RYYDPDSAQY LSVDPLGLAG GFRTQGYVHE PSQWVDPFGL QQCPEREVNG TKIYGKGQKD GTPGHDQFSE VVANKLAMSG KFKEIYLNRS YNFASDNAVS ARRPDIMAVD INGRVHAIEM ASRTDMGAKL RTLTTRNYDA MQNLPPNARG DILVFEHPYD AQSIKTDLDN LISGI
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