Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_4897 |
Symbol | |
ID | 6179218 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | - |
Start bp | 2043413 |
End bp | 2044951 |
Gene Length | 1539 bp |
Protein Length | 512 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641684650 |
Product | major facilitator transporter |
Protein accession | YP_001811561 |
Protein GI | 172063910 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.672511 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.0228989 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGCTAT CCGACACCCG CAGGAATGCG GTCGCGCTCG CGGCCGTCTG TCTCACGTCG TTGATGTTCG GCCTCGAGAT CTCGAGCGTG CCGGTGATCC TGCCGACGCT CGAACATGTG CTGCACGGCG ACTTCAACGG CATGCAGTGG ATCATGAATG CGTACACGAT CGCGTGTACG ACGGTGCTGA TGGCGGCCGG CACGCTCGCC GACCGCTTCG GCCGCAAGCG CGTGTACGTG ATCGGCACCG TGCTGTTTGG CGCGACGTCG TTGCTGTGCG GGCTCGCGCC GAACGTGCCG GTGCTGGTCG CGGGCCGGCT GCTGCAGGGC GCGAGTGGCG GCGCGATGCT GATCTGCCAG ATCGCGGTGC TGTCGCACCA GTTCCGCGAA GGGCGCGAGC GCGGCCGCGC GTTCGGGATC TGGGGAATCG TGTTCGGGAT CGGTCTCGGC TTCGGGCCGA TCGTCGGCGG CGCGATCGTC GCGCTGGCGA GCTGGCCGTG GGTGTTTCTC GTCCACGCGC CGCTCGCGGC CGTCGCGCTC GTGCTGATCG GCGGCGCGGT GCGGGAGTCG CGCGATCCGC ATGCGGGCAC GCTCGACGTC GCGGGCATCG TCACGCTGTC GCTCGCCGTG CTCGGCCTCG CGTTCTATAT CACCCAAAGC GCGGAGCTCG GGCTCACTAG CGCGGCCGGC GTCGGCGTGC TTGGCGCGAC CGTGCTTGCG CTGGCGGGCT TCGTCGTCGC GGAGCGCGTG AGCGCGCGGC CGATGTTCGA CTTCTCCGTG TTCCGGATTC GCGCGTTCAC CGGCGCGATC TTCGGCTCGA TGGGGATGAA CTTCAGTTTC TGGCCGTTCA TGATCTACCT GCCGATCTGG TTCCAGGTCG CGCTGGGATA CGACAGCGTG ACGGCCGGCC TCGCGCTGCT CGCGTACACG CTGCCGACGC TGGTCGCGCC GCCGTTCGGC GAGCGGCTCG CGCTGCGCTA CGGGCCCGGT GTCGTCATTC CGGGCGGCCT GTTCACGATC TCGGCTGGTT TCGCGCTGAT GCGGATCGGC AGCGGCGTCG ACCACGCGAG CTGGCTTACG ATGCTGCCGG GCTGCGTGAT CGCCGGCATC GGGCTCGGGC TGACCAACAC GCCGGTCACG AACACGACGA CGGGCTCGGT GCCGGGTTCG CGGGCCGGGA TGGCGTCCGG CATCGACATG AGTGCGCGGA TGATCTCGCT CGCGCTGAAT ATCGCGGCGA TGGGCTTCGT GCTGGTCGCG GGGATTGTCG CGAGCCTGAA GGCGGGGGTG GCGGAGGCGG TCGATGCGGG GGCGTTGCGC GCGCTGGCGC AGCAGATCGC GTCGGGCCGC ACCGACGGGT TGCAGACGAT AGCGCCGGCG CTCGCGCAGG CCGACCCGAC CGGCACCGCG CTGCACGCGG CGCTCGTGCA CGGGTTCGGC TGGGTGATGG TGTACGGCGC GGCCGGCGTG ACCGTGCTCG CGACCGCGAG CGCGGTGGCG TTCGCGCCGG TGGGGCGGAG GGGGGCGGTG TGTGAATGA
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Protein sequence | MTLSDTRRNA VALAAVCLTS LMFGLEISSV PVILPTLEHV LHGDFNGMQW IMNAYTIACT TVLMAAGTLA DRFGRKRVYV IGTVLFGATS LLCGLAPNVP VLVAGRLLQG ASGGAMLICQ IAVLSHQFRE GRERGRAFGI WGIVFGIGLG FGPIVGGAIV ALASWPWVFL VHAPLAAVAL VLIGGAVRES RDPHAGTLDV AGIVTLSLAV LGLAFYITQS AELGLTSAAG VGVLGATVLA LAGFVVAERV SARPMFDFSV FRIRAFTGAI FGSMGMNFSF WPFMIYLPIW FQVALGYDSV TAGLALLAYT LPTLVAPPFG ERLALRYGPG VVIPGGLFTI SAGFALMRIG SGVDHASWLT MLPGCVIAGI GLGLTNTPVT NTTTGSVPGS RAGMASGIDM SARMISLALN IAAMGFVLVA GIVASLKAGV AEAVDAGALR ALAQQIASGR TDGLQTIAPA LAQADPTGTA LHAALVHGFG WVMVYGAAGV TVLATASAVA FAPVGRRGAV CE
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