| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4861 |
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| Symbol | |
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| ID | 6180618 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | + |
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| Start bp | 1999479 |
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| End bp | 2001818 |
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| Gene Length | 2340 bp |
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| Protein Length | 779 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641684615 |
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| Product | lysine decarboxylase |
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| Protein accession | YP_001811526 |
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| Protein GI | 172063875 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.112463 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.00183644 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCGCTA CCTTGACCCA ACCGGCATTT CGCCGCCTCG GCATGAAGGC GCTGCTCGTG
CAGCACGACA TCGATGAACG CACGGCCACC GGGCGCGCAG CCACCGCCCT CGCCGAAGAA
TTGCGCGCAC GGCTGGTCGA CGTCGTGATC GCGACGTCCG CCGAAGACGC GCGCGCGGTG
GTCGACGCCG ATCCCGCGAT CCAGTGCCTG CTGCTCAACT GGGAGCTCGG CAACGATCCC
GAGCATGCGC CCGCGCGGGC CGTGCTCGAC GCGATGCGCG CGCGCAATGC GACGGTGCCG
GTGTTCCTGC TCGCGAGCCG CGCGAGCGCG GCCGCGATTC CCGTCGACGC GATGCGCAAG
GCCGACGACT TCATCTGGAT GCTGGAGGAC ACCACCGCGT TCATCGGCGG GCGGATCGTC
GCCGCGATCG AACGCTATCG CGAGACCGTG CTGCCGCCGA TGTTCCGCGC ACTCGCGCAG
TTCTCGCGCG TGTACGAATA CTCGTGGCAC ACGCCGGGCC ATACGGGCGG CACCGCGTTC
CTGAAATCGC CGGTCGGCCG CGCGTACTTC GAATTCTTCG GCGAAGCGCT GTTCCGCTCG
GACCTGTCGA TCTCGGTCGG CGAACTCGGC TCGCTGCTCG ACCACTCGGG CCCGATCGGC
GAAAGCGAAC GCTACGCGGC GCGCGTGTTC GGCGCGCACC GCACGTATCA CGTGACGAAC
GGCTCGTCGA TGTCGAACCG CGTGATCCTG ATGGCGAGCG TCACGCGCAA CCAGGTCGCG
CTGTGCGACC GCAACTGCCA CAAGTCGGCC GAGCACGCGA TGACGATGTC GGGCGCGATT
CCGACCTACC TGATCCCGTC GCGCAACCAT TACGGGATCA TCGGGCCGAT CATGCCGGAA
CGGCTCACGG CCGCCGCCGT GCGCCTCGCG GTCGACGCGA ATCCGCTCGT GCGCGGCCGC
GACGGCATCG ATCCGACGCC CGTGCATGCG CTGATCACGA ACTCGACCTA CGACGGCCTC
TGCTACAACG TCGCGCGCGT CGAGGAATTG CTCGGCCAGA GCGTCGACCG GCTGCATTTC
GACGAAGCCT GGTACGGCTA TGCGCGCTTC AACCCGATCT ACCGCGACCG TCACGCGATG
CACGGCGATC CGTCGCAGCA CGACGCGAGC AAGCCGACCG TGTTCGCGAC GCAATCGACG
CACAAGCTGC TCGCCGCGCT GTCGCAGGCA TCGTTCATCC ATGTCCGCAA CGGCCGCAAC
CCGATCGAGC ATGCACGTTT CAACGAGGCG TACATGATGC ACGCGTCGAC GTCGCCGAAC
TACGCGATCA TCGCGTCGAA CGACGTGAGC GCCGCGATGA TGGACGGTCC CGGCGGCGAG
GCGCTGACGA CCGACGCGAT CCGCGAGGCC GTGTCGTTTC GCCGGATGCT CGCGCGGCTG
CACGCGGAAT GCGAGGAGAA CAACGACTGG TTCTTCAACG GCTGGCAGCC GGACACCGTG
GTCGATCGCA AGACGGGCCG GCGCGTGCGC TTCCATGAAG CGGACGAAAC GCTGCTCGCC
ACCGATCCGT CATGCTGGGT GCTGCATCCG GGCGACACCT GGCACGGCTT CGGCGAGATC
GAGGACGACT ACTGCATGCT GGACCCGATC AAGGTATCGA TCGTCACGCC GGGCGTCGCG
CCGCACGGCG GCCTGATGCC GGTCGGCATT CCGGCGTCGG TCGTCACGGC GTATCTCGAC
CGGCACGGGA TCGTCGTCGA GAAGACGACC GACTTCACGA TCCTGTTCCT GTTCTCGCTC
GGCGTGACGA AGGGCAAGTG GGGCACGCTC GTCAACACGC TGCTCGACTT CAAGCGCGAC
TACGACGCGA ACGCGCCGCT CGAACAGGCG CTGCCGGACC TCGTCGCGCG TTATCCGGAC
CGCTACGGCA AGCTCGGCCT GCGCGAGCTG TGCGACCTGA TGTTCAGCGC AATGAGCGAC
CTGAAGACGA CCGAGATGAT GTCGCGCGGC TTCTCGACGC TGCCGCAGCC CGACTTCAGC
CCGGCCGAGG CGTTCGAGCA TCTCGTGCAC AACGACATCG AGATGCTCGA GCTGTCGGAG
ATGGCCGGCC GCACCGTCGC GACGGGCGTC GTGCCCTACC CGCCCGGCAT TCCGCTGCTG
ATGCCCGGCG AGAACGCGGG GCCGGCCGAC GGGCCGCTGC TCGGCTACCT GCGGGCGCTC
GAGCAATTCG ACCTGCGCTT CCCCGGCTTC ACGCACGATA CGCACGGCGT CGAAGTCGAG
GACGGCGTGT ACCGGATCGC CTGCATCCGG CAAGTCGATC GCAAGACCAA CACGCGCTGA
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| Protein sequence | MTATLTQPAF RRLGMKALLV QHDIDERTAT GRAATALAEE LRARLVDVVI ATSAEDARAV
VDADPAIQCL LLNWELGNDP EHAPARAVLD AMRARNATVP VFLLASRASA AAIPVDAMRK
ADDFIWMLED TTAFIGGRIV AAIERYRETV LPPMFRALAQ FSRVYEYSWH TPGHTGGTAF
LKSPVGRAYF EFFGEALFRS DLSISVGELG SLLDHSGPIG ESERYAARVF GAHRTYHVTN
GSSMSNRVIL MASVTRNQVA LCDRNCHKSA EHAMTMSGAI PTYLIPSRNH YGIIGPIMPE
RLTAAAVRLA VDANPLVRGR DGIDPTPVHA LITNSTYDGL CYNVARVEEL LGQSVDRLHF
DEAWYGYARF NPIYRDRHAM HGDPSQHDAS KPTVFATQST HKLLAALSQA SFIHVRNGRN
PIEHARFNEA YMMHASTSPN YAIIASNDVS AAMMDGPGGE ALTTDAIREA VSFRRMLARL
HAECEENNDW FFNGWQPDTV VDRKTGRRVR FHEADETLLA TDPSCWVLHP GDTWHGFGEI
EDDYCMLDPI KVSIVTPGVA PHGGLMPVGI PASVVTAYLD RHGIVVEKTT DFTILFLFSL
GVTKGKWGTL VNTLLDFKRD YDANAPLEQA LPDLVARYPD RYGKLGLREL CDLMFSAMSD
LKTTEMMSRG FSTLPQPDFS PAEAFEHLVH NDIEMLELSE MAGRTVATGV VPYPPGIPLL
MPGENAGPAD GPLLGYLRAL EQFDLRFPGF THDTHGVEVE DGVYRIACIR QVDRKTNTR
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