Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_4759 |
Symbol | |
ID | 6179986 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | + |
Start bp | 1895929 |
End bp | 1897413 |
Gene Length | 1485 bp |
Protein Length | 494 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641684518 |
Product | carbohydrate-selective porin OprB |
Protein accession | YP_001811429 |
Protein GI | 172063778 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3659] Carbohydrate-selective porin |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.15964 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAATC GTTTCGAACC CGCGCGCACG CGCCGTCTCG ATGCGCTCAC GGCGCTTCTC CTGTCCCTCG CCGCCGCACC CGCGTTCGCG CAATCGGCGT CGCCAGCCGC TGCCGAATCG ACGGCCGGCG CCACCGCCAG CGACACCGCC CCCGCCCAGC CCGCCGATGC CGCCACGCCC GCCCCCACCG GCTTCTGGGA CCGTTCGAAC CTGTTCGGCA ACATGGGCGG CCTGCGCGAC GTGCTCGGCG ACCACGGCGT CACGCTGAGC CTGCAGGAAA CCAGCGAATA CCTGTACAAC ACCGCGGGCG GCACGAATCG CGGCGGCGCG TACCAGGGCG TCACGCAATT CGGCTTCAAC GTCGATACGG AGAAGGCGAT CGGGCTGCCG GGCGGCACGT TCAACGTGTC GGGGCTGCAG ATCCACGGCA CCAACCTCAC GCAGCGCTAC CTGCAGACGC TGCAGACCGC GACCGGCATC GAGGCGAATT CGACCACGCG GCTGTGGGAG CTCTGGTACC AGCAGGCGTT TCTCGACGGC AAGGCCGACG TGAAGGTCGG CCAGCAGAGC GTCGACCAGG AGTTCATGGT GAGCCAGTAC GCGGCGACGT TCATGAACGC GACGTTCGGC TGGCCCGTTC TGCCGGCGAC CGACCTGCCG GCCGGCGGCC CCGCGTATCC GCTGTCGTCG CTCGGCGTGC GGCTGCGCGT GAAACCGGCC GACGCGTGGA CCGCGATGGT CGGCGTGTTC GACGGCAACC CGGCCGGCCG CAGCGACGGC GACGCCCAGT CGCTGAACGC GCACGGCACC AACTTCAACC TGCGCAGCGG CGCGTTCGTG ATCGGCGAAC TCCAGTACGC GCTGAACGCG CCGCCCGCGG ATCCGAAGGC GCCGCAACCG GCCGGCCTGC CCGGCACGTA CAAGCTCGGC TTCTGGTATC AGTCGCAGCA CGCGAACGAT CCGCGCTTCG GCACCGACGG GCTGTCGCTC GCGAATCCCG ACAGCAACGG GATCGCCGCC ACGCATCGCG GCAACTACGG CTTCTATGCG GTCGCGGATC AGATGGTGTG GCGGCCGTCG GCCGACAGCC CCCGCTCGGT CGGCGTGTTC GCGCGCGTGA TGGGCTCGCC GGGCGATCGC AACGTCGTCG ATTTCGCGGC GAATGCCGGC ATCACGCTGA AGGCGCCGTT CGCCGGACGC GACAACGATA CGGCCGGCAT CGCGATCGGC TACGCGAAGA TCGGCTCGCA CGCGCGTGGG CTCGACGGCG ACACCGGCGC CTACACGACG CCCGGCTATC CGGTGCGCCG CGCGGAAACG GTGATCGAGG CGACCTACCA GTACCAGGTC ACGCCGTGGT GGCAGTTGCA GGCCGACCTG CAGCACTTCT TCCGGCCGGG CGGCGGCATC CCGAACCCGA ACGCGGCCGG CGCGCGCATC GGCGACGAAA CGGTGGTCGG CGTGCGCACG ACGATCACGT TCTGA
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Protein sequence | MKNRFEPART RRLDALTALL LSLAAAPAFA QSASPAAAES TAGATASDTA PAQPADAATP APTGFWDRSN LFGNMGGLRD VLGDHGVTLS LQETSEYLYN TAGGTNRGGA YQGVTQFGFN VDTEKAIGLP GGTFNVSGLQ IHGTNLTQRY LQTLQTATGI EANSTTRLWE LWYQQAFLDG KADVKVGQQS VDQEFMVSQY AATFMNATFG WPVLPATDLP AGGPAYPLSS LGVRLRVKPA DAWTAMVGVF DGNPAGRSDG DAQSLNAHGT NFNLRSGAFV IGELQYALNA PPADPKAPQP AGLPGTYKLG FWYQSQHAND PRFGTDGLSL ANPDSNGIAA THRGNYGFYA VADQMVWRPS ADSPRSVGVF ARVMGSPGDR NVVDFAANAG ITLKAPFAGR DNDTAGIAIG YAKIGSHARG LDGDTGAYTT PGYPVRRAET VIEATYQYQV TPWWQLQADL QHFFRPGGGI PNPNAAGARI GDETVVGVRT TITF
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