Gene BamMC406_4759 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_4759 
Symbol 
ID6179986 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand
Start bp1895929 
End bp1897413 
Gene Length1485 bp 
Protein Length494 aa 
Translation table11 
GC content70% 
IMG OID641684518 
Productcarbohydrate-selective porin OprB 
Protein accessionYP_001811429 
Protein GI172063778 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3659] Carbohydrate-selective porin 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.15964 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAATC GTTTCGAACC CGCGCGCACG CGCCGTCTCG ATGCGCTCAC GGCGCTTCTC 
CTGTCCCTCG CCGCCGCACC CGCGTTCGCG CAATCGGCGT CGCCAGCCGC TGCCGAATCG
ACGGCCGGCG CCACCGCCAG CGACACCGCC CCCGCCCAGC CCGCCGATGC CGCCACGCCC
GCCCCCACCG GCTTCTGGGA CCGTTCGAAC CTGTTCGGCA ACATGGGCGG CCTGCGCGAC
GTGCTCGGCG ACCACGGCGT CACGCTGAGC CTGCAGGAAA CCAGCGAATA CCTGTACAAC
ACCGCGGGCG GCACGAATCG CGGCGGCGCG TACCAGGGCG TCACGCAATT CGGCTTCAAC
GTCGATACGG AGAAGGCGAT CGGGCTGCCG GGCGGCACGT TCAACGTGTC GGGGCTGCAG
ATCCACGGCA CCAACCTCAC GCAGCGCTAC CTGCAGACGC TGCAGACCGC GACCGGCATC
GAGGCGAATT CGACCACGCG GCTGTGGGAG CTCTGGTACC AGCAGGCGTT TCTCGACGGC
AAGGCCGACG TGAAGGTCGG CCAGCAGAGC GTCGACCAGG AGTTCATGGT GAGCCAGTAC
GCGGCGACGT TCATGAACGC GACGTTCGGC TGGCCCGTTC TGCCGGCGAC CGACCTGCCG
GCCGGCGGCC CCGCGTATCC GCTGTCGTCG CTCGGCGTGC GGCTGCGCGT GAAACCGGCC
GACGCGTGGA CCGCGATGGT CGGCGTGTTC GACGGCAACC CGGCCGGCCG CAGCGACGGC
GACGCCCAGT CGCTGAACGC GCACGGCACC AACTTCAACC TGCGCAGCGG CGCGTTCGTG
ATCGGCGAAC TCCAGTACGC GCTGAACGCG CCGCCCGCGG ATCCGAAGGC GCCGCAACCG
GCCGGCCTGC CCGGCACGTA CAAGCTCGGC TTCTGGTATC AGTCGCAGCA CGCGAACGAT
CCGCGCTTCG GCACCGACGG GCTGTCGCTC GCGAATCCCG ACAGCAACGG GATCGCCGCC
ACGCATCGCG GCAACTACGG CTTCTATGCG GTCGCGGATC AGATGGTGTG GCGGCCGTCG
GCCGACAGCC CCCGCTCGGT CGGCGTGTTC GCGCGCGTGA TGGGCTCGCC GGGCGATCGC
AACGTCGTCG ATTTCGCGGC GAATGCCGGC ATCACGCTGA AGGCGCCGTT CGCCGGACGC
GACAACGATA CGGCCGGCAT CGCGATCGGC TACGCGAAGA TCGGCTCGCA CGCGCGTGGG
CTCGACGGCG ACACCGGCGC CTACACGACG CCCGGCTATC CGGTGCGCCG CGCGGAAACG
GTGATCGAGG CGACCTACCA GTACCAGGTC ACGCCGTGGT GGCAGTTGCA GGCCGACCTG
CAGCACTTCT TCCGGCCGGG CGGCGGCATC CCGAACCCGA ACGCGGCCGG CGCGCGCATC
GGCGACGAAA CGGTGGTCGG CGTGCGCACG ACGATCACGT TCTGA
 
Protein sequence
MKNRFEPART RRLDALTALL LSLAAAPAFA QSASPAAAES TAGATASDTA PAQPADAATP 
APTGFWDRSN LFGNMGGLRD VLGDHGVTLS LQETSEYLYN TAGGTNRGGA YQGVTQFGFN
VDTEKAIGLP GGTFNVSGLQ IHGTNLTQRY LQTLQTATGI EANSTTRLWE LWYQQAFLDG
KADVKVGQQS VDQEFMVSQY AATFMNATFG WPVLPATDLP AGGPAYPLSS LGVRLRVKPA
DAWTAMVGVF DGNPAGRSDG DAQSLNAHGT NFNLRSGAFV IGELQYALNA PPADPKAPQP
AGLPGTYKLG FWYQSQHAND PRFGTDGLSL ANPDSNGIAA THRGNYGFYA VADQMVWRPS
ADSPRSVGVF ARVMGSPGDR NVVDFAANAG ITLKAPFAGR DNDTAGIAIG YAKIGSHARG
LDGDTGAYTT PGYPVRRAET VIEATYQYQV TPWWQLQADL QHFFRPGGGI PNPNAAGARI
GDETVVGVRT TITF