| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4725 |
|---|
| Symbol | |
|---|
| ID | 6179771 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 1845356 |
|---|
| End bp | 1846315 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641684484 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001811395 |
|---|
| Protein GI | 172063744 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.70917 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0655004 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCACC CCGATCTGGA AGTGGTCGAA GTGCGACGCG ACGAGTCGTT CAAGGTCTGG
TCGCACGGCT ATCCGTATCG CACGATCCGC TGGCATTTTC ATCCCGAATT CGAACTGCAT
CTGATCGTCG CGACGCGCGG CAAGTATTTC GTCGGCGACC ATATCGGCTC GTTCGGCCCG
GGCCATCTCG TGCTGCTCGG CCCGAACCTG CCGCACAACT GGGTCAGCGA CATGGCGGAA
GGCGAAACCG TCGAGCGCCG CAATCTGGTG ATCCAGTTCG ATCCGTCGTT CGTGCGGCGC
TGCATGGACG CGTTTCCCGA ATGCCGCGAC GCGCAGGCGC TGCTCGACGA CGCGCGGCGC
GGCGTCGGCT TCGATGACGC CACGAGCGCG GCGATCGCGC CGCTGTTCGA CGAGCTGCTG
GGCGCGCGCG GCATGCGCCG CATCGCGCTG TTCATGACGA TCCTCGAGCG GCTGTGCGGC
GCGGCGCAAC GCACGCTGCT CGCGAGCCCC GCCTACGACC AGGCGCACGT GACGCCCACG
CGGCTCAGCC ACGCGCTGTC GTACATCGGC AAGAACCTCG CGTCGGAGCT GCGCGAATCG
GATCTCGCGC AACTGACCGG GCAGAGCGTC AGCGCGTTCT CGCGCGCGTT TCACCGCCAT
ACGGGCATGC CGTTCGTCCA GTACGTGAAC CGCCTGCGCA TCGAATCCGC GTGCCAGATG
CTGCTCGCCG ACGACGCGAA CATCACCGAC ATCTGCTTCC AGGCCGGCTT CAACAATGTG
TCCAACTTCA ACCGCCAGTT CCGCGCTGTG AAGGGGATGG CGCCGTCCGA GTTTCGCGCG
CTCCAGCGCC TGAACGCGCG CAGCCGCGAG CTCGCGCTGC ACGCGGCGCC CACCGGCAAC
CCGATGCCGC CGCGCGTGGT CACGCCCGCC GCGCCCGGTC TCGTACCGCA GCCCGGATGA
|
|---|
| Protein sequence | MMHPDLEVVE VRRDESFKVW SHGYPYRTIR WHFHPEFELH LIVATRGKYF VGDHIGSFGP
GHLVLLGPNL PHNWVSDMAE GETVERRNLV IQFDPSFVRR CMDAFPECRD AQALLDDARR
GVGFDDATSA AIAPLFDELL GARGMRRIAL FMTILERLCG AAQRTLLASP AYDQAHVTPT
RLSHALSYIG KNLASELRES DLAQLTGQSV SAFSRAFHRH TGMPFVQYVN RLRIESACQM
LLADDANITD ICFQAGFNNV SNFNRQFRAV KGMAPSEFRA LQRLNARSRE LALHAAPTGN
PMPPRVVTPA APGLVPQPG
|
|---|
| |