| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4670 |
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| Symbol | |
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| ID | 6181290 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | + |
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| Start bp | 1786915 |
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| End bp | 1790106 |
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| Gene Length | 3192 bp |
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| Protein Length | 1063 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641684429 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001811340 |
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| Protein GI | 172063689 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCTCG GCCGCTTGTC CGTGCAGCAG CCGGTGCTCG CGATCGTCCT GTCGATCGTG
CTGACGATCG CCGGCGCGTT GGCCTATTTC TCGCTCGCGG TGTCCGAGTA TCCGGACATC
GCGCCGCCCA CTGTCGTGAT TCAGGCGACC TATCCGGGCG CCTCCGCGGA AACGGTATCC
CAGACGGTGT CGACGCCGAT CGAACTGGAA GTCAACGGCG TGGAAGACAT GCTGTACATG
TACAGCCAGG CGACGTCGGA CGGCAGCCTG AACATCACCG TGACGTTCAA GCCGGGCACC
GATGTCGACA AAGCCCAGGT GCTGGTGCAG AACCGCGTCG CGCTCGCGAC GCCGCGCCTG
CCCGAGCCCG TGCAGCGCAG CGGCGTGTCC GTGCGCAAAT CGTCGCCGAC GCAGCTCGGC
ACGATCTTCC TGTACTCGCC CGACCAGCGT TACGACCCAC TGTACGTATC GAACTACGCG
ATCCGCAACG TCGCGGACGT GCTCAAGCGG ATCGAAGGCG TCGGCGACAT CAACCCGCTC
GGCGCGCGCG AATACTCGAT GCGCATCTGG CTCGATCCCG AGCGCGTCGC GTCGTTCGGC
CTGAGCCCGA GCGACCTGAT CGCCGCGGTG CGCGCGCAAA ACACGCAGCT CGCGGGCGGC
GTGGTCGCGC AGGCGCCTAT CACGAACCAG GCCTTCCAGC CGAACCTGAT CTTCGAAGGG
CGGCTCAAGC GCCCTGAGGA TTTCAGCGAC ATCGTCGTGA AGCAGGGCAA GGACGGGCGG
CTCGTGCGGC TGAAGGATGT CGCGCGCATC GAAGTGGGCG CACTCGCCTA TGCGACCGAC
AGCTACATGC TGCGCCACCC GACGATCGCG CTGCAGGTGC TGCAGCAGCC CGGCGCCAAT
GCGGTCGCGA CGATGGCTGC GGTCGAGAAG AAGATGGCCG AGCTGAGCCA GGATTTCCCG
AGGGGCATCG TCTACAACAT CGGCTACAAC CCGACCGCGT TCATCGGCGA CAGCATCCAC
GAACTCGTCA AGACCATCTA CGAGGCGGTC GTGCTCGTCG TGTTCGTCGT GCTGCTGTTC
CTGCAGGGCT GGCGGCCGTC GATCATCCCG ATCCTGTCGA TTCCGGTGTC GCTCGTCGGC
ACGTTCGCGG CGATGGCCGT GCTCGGATAC TCGATCAACA ACCTGACGCT GTTCGGCCTC
GTGCTCGCGG TGGGGATCGT CGTCGACAAT GCGATCGTCG TGGTCGAGAA CGTCGAGCGG
CACTTGTCGA CCGGTGCAGG GCCGCGCGAC GCGACATTGT TGACGATGAA GGAAGTCGGC
GGCGCGCTGT TCGCGATTAC GCTCGTGCTT TGCGCGGTGT TCGTGCCGAC TTCGTTCATT
CCGGGCATCT CGGGCCAGTT CTTCCGCCAG TTCGGCGTGA CGATCGCCGT GTCGACCGCG
ATTTCGTTCT TCACGTCGGT GACGCTCGCG CCCGCGCTGT CGGCGATGAT CCTGAAAGCG
CATGCCGACG AACCCGATGC CGCCGCGCCC GTGTCGCGGG TTGCCGCGTT GTTCGCGCCT
GCGATGCGTG TCGTGCAGCG CTTCGCGAAC GCATTCAACC GCGTGTTCCA GCGCCTGTCC
GACGCGTATG GCAGGCTGGT CCGGAAAGTT GTGCGGATTA TCCCCGCGAT GGCCGCAATA
TACGTCGTGC TGATCGCCGC GACCGGCTAT CTGCTCGTAT CGAGCCCAAA GGGCTTCATT
CCTGCGCAAG ATCGCGGCTA CCTCGTTGTA CTCGTGCGGA TGCCTGACGG CGCGACGCTC
GAACGCACGA GCGCGGTCGC GCGCAAGATC GAGGACATCG CGCTGTCGGT GCCCGGTGTC
GCCCGCGTGC CGGTGTTTTC CGGCGTCAAT GCGGCGACCG GTACGAATTC GGCGAACAGC
GCCGGCCTGT TCCCGGTGTT CAAGCCGTGG CCGGAGCGCA AGAAGCAGGG CCTGACGATC
GAGAAGATTG CAGCCGAGAT GCGTCAACGG CTGGCGAGCG TCACGGAAGC GTCGATCGTC
GTCGCGATGC CACCGCCGGT GCAAGGCCTC GGCAGCACGG GCGGCTTCGC GATGCGGCTG
GAAGACCGCA ACGGCCTCGG CACCGCCGCG CTCGCGAAGG CGACGCGGGA TCTGGTGGCC
GCCGCAAACC GCACGCCCGG CATGGTCGGC GTCTATACGC CCTACTCCGC GACGAGCCCG
CAGGTGCATG TCGAACTCGA CCGCGAGAAG GCCGAGATGC TCGGCGTGCC CAGCCAGGAA
ATCAACGATG CGGTCGAAAC GTACTTCGGC TCGACCTACA TCAACGACTT CAACATCGTC
GGGCGCACCT ACCGCGTGAC CGCGCAGGCC GACCTGCCGT TCCGCGTCGA AGCGTCCGAT
CTCGCGCGGC TGAAGGTACG CAACCGCGAC GGCGAAATGG TGCCGATCGG CAGCGTCACG
CGCATCGACG ACACGCTCGG CGTCGATCGC GCACCGCGCT ACAACCTGTA TCCGGCCACC
GAAATCAACG GCGACACCGC GCCGGGCCTG GGCTCCGGCT TCGCGATCAA GACGATGGAA
ACGCTCGCGA AGCAGGTGCT GCCGCCCGGC ATCTCGTTCG AATGGACCGA TCTCTCGTAC
CAGCAGACCA CCGCCGGCAA CACGGGGCTG CTCGTATTCC CGCTGTGCGT GCTGCTCGTG
TATCTGGTGC TCGCCGCGCA GTACGGCAGC TGGAGCCTGC CCGTCTCGAT CCTGCTGATC
GTGCCGATGT GCCTGCTCGC CGCATCGCTC GGCGTGCGCG CACTCGGCCA GGACGTGAAC
ATCCTCACGC AGATCGGCTT CATCGTGCTG GTCGGGCTCG CCGCGAAGAA CGCGATCCTG
ATCGTCGAGG TCGCGCGACA GTTGGAGGCC GACGGCATCG ATCTGGTCGA GGCCGTCGTC
GAAGCGTGCG TGCAGCGGCT GCGCCCGATC GTGATGACGT CGCTTGCGTT CATTCTCGGC
GTGCTGCCGC TCGTGATTTC CGAGGGCGCC GGCGCGGAAA TGCGCCAGGC GGTCGGTGCG
GCCGTGTTCT TCGGGATGAT CGGCGTGACG TTCTTCGGGC TGCTGTTTAC GCCCGTCTTC
TACGTGATGG TTCGCCGGCT CGCGATGCGC AAGACCGCTG TCGCGGCCGT CGCGACGGAG
GTGGTGCAAT GA
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| Protein sequence | MNLGRLSVQQ PVLAIVLSIV LTIAGALAYF SLAVSEYPDI APPTVVIQAT YPGASAETVS
QTVSTPIELE VNGVEDMLYM YSQATSDGSL NITVTFKPGT DVDKAQVLVQ NRVALATPRL
PEPVQRSGVS VRKSSPTQLG TIFLYSPDQR YDPLYVSNYA IRNVADVLKR IEGVGDINPL
GAREYSMRIW LDPERVASFG LSPSDLIAAV RAQNTQLAGG VVAQAPITNQ AFQPNLIFEG
RLKRPEDFSD IVVKQGKDGR LVRLKDVARI EVGALAYATD SYMLRHPTIA LQVLQQPGAN
AVATMAAVEK KMAELSQDFP RGIVYNIGYN PTAFIGDSIH ELVKTIYEAV VLVVFVVLLF
LQGWRPSIIP ILSIPVSLVG TFAAMAVLGY SINNLTLFGL VLAVGIVVDN AIVVVENVER
HLSTGAGPRD ATLLTMKEVG GALFAITLVL CAVFVPTSFI PGISGQFFRQ FGVTIAVSTA
ISFFTSVTLA PALSAMILKA HADEPDAAAP VSRVAALFAP AMRVVQRFAN AFNRVFQRLS
DAYGRLVRKV VRIIPAMAAI YVVLIAATGY LLVSSPKGFI PAQDRGYLVV LVRMPDGATL
ERTSAVARKI EDIALSVPGV ARVPVFSGVN AATGTNSANS AGLFPVFKPW PERKKQGLTI
EKIAAEMRQR LASVTEASIV VAMPPPVQGL GSTGGFAMRL EDRNGLGTAA LAKATRDLVA
AANRTPGMVG VYTPYSATSP QVHVELDREK AEMLGVPSQE INDAVETYFG STYINDFNIV
GRTYRVTAQA DLPFRVEASD LARLKVRNRD GEMVPIGSVT RIDDTLGVDR APRYNLYPAT
EINGDTAPGL GSGFAIKTME TLAKQVLPPG ISFEWTDLSY QQTTAGNTGL LVFPLCVLLV
YLVLAAQYGS WSLPVSILLI VPMCLLAASL GVRALGQDVN ILTQIGFIVL VGLAAKNAIL
IVEVARQLEA DGIDLVEAVV EACVQRLRPI VMTSLAFILG VLPLVISEGA GAEMRQAVGA
AVFFGMIGVT FFGLLFTPVF YVMVRRLAMR KTAVAAVATE VVQ
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