Gene BamMC406_4654 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_4654 
Symbol 
ID6180675 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand
Start bp1768425 
End bp1769120 
Gene Length696 bp 
Protein Length231 aa 
Translation table11 
GC content65% 
IMG OID641684413 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001811324 
Protein GI172063673 
COG category[R] General function prediction only
[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGAAAG TTGCTGTAGT AACGGGGGGC GGCACCGGCA TCGGTCGCGC GATCGCCGAA 
GAATTCTTGC GTGCGGGCCT GCGCCCCGTG TCCGTCGGAA AGGACGCCGA CGAGGATCTC
GATCCGGCGA TCGCGTTCCG GCGAGTCGAC GTGACGTCAG CCGCTGAAGT TCGCGACGCA
TTCGGCGATC TTGCGCAGAT TCACGTGCTC GTCAACGCCG CCGGAATCAT CCTCCACGAC
CGCGCGGAGT TCGATTCAGC GGGCTTTCGA AAAGTGGTCG ACGTCAATCT GAACGCCTGC
CAGCTCACGA CCGAAGTCGC GCTCGACAAG CTGTCCGCGG TGCGCGGCTG CGTCGTCAAT
ATCGCATCGA TGTGGAGCTT TTTCGGCTCG GCCCGCAATC CTGCCTATAC GGCAAGCAAG
GCCGGCCTCG TTGGCTTGAC GCGCGCGCAC GCCGCTGCGT TCGCGGATCG CGGGGTGCGC
GTCAATGCAG TGGCGCCCGG CTGGATCGAA ACGCGACTGT CTGCCGGAGC GCTGAACAAC
CCCGAGCGCA GCGGTTCGAT TCGCGCACGT CTGCCGCTCG GGCGCTGGGG GCAGCCTTCG
GATGTCGCCA GGGGCGTGAA ATTCCTTTGC TCGGCCGATG CGGACTACAT CACGGGAGTC
GTCCTTCCGA TCGACGGCGG ATTCAGCATC GCGTGA
 
Protein sequence
MTKVAVVTGG GTGIGRAIAE EFLRAGLRPV SVGKDADEDL DPAIAFRRVD VTSAAEVRDA 
FGDLAQIHVL VNAAGIILHD RAEFDSAGFR KVVDVNLNAC QLTTEVALDK LSAVRGCVVN
IASMWSFFGS ARNPAYTASK AGLVGLTRAH AAAFADRGVR VNAVAPGWIE TRLSAGALNN
PERSGSIRAR LPLGRWGQPS DVARGVKFLC SADADYITGV VLPIDGGFSI A