| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4258 |
|---|
| Symbol | |
|---|
| ID | 6179505 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 1316837 |
|---|
| End bp | 1318828 |
|---|
| Gene Length | 1992 bp |
|---|
| Protein Length | 663 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641684027 |
|---|
| Product | multi-sensor hybrid histidine kinase |
|---|
| Protein accession | YP_001810938 |
|---|
| Protein GI | 172063287 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.267585 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGACCT TTACCCGTGA GCTGTTTCGG CAGGGCATAT GGGTCGTGCT GGCCGTCGGG
GTGGCGGCCG TGCTGCAGGC GTGGGCGATC CACGTCATCG GCATGCATGA ACCGTTCGCG
CCGCTGCCTT TCTACGCCGG TGTCGCGGCT GCGGCCTGGC TGACGTCGTT TGCCGGCGGC
GTCGCCGCGA GCGCCGTGAG CCTCGCCGTG ATCGGCGGCC TGTGGTGGCG CAATATGCCG
CTGCCCGATC TCCTCTCCCA GGCCGGCGCT TTCGTCGCGA TCAGCTTCGT CGAGTGCGTG
CTCGTGATGG CCGTCAAGCC GCTGCTCGCC AACGACCGCT TGCGCGGCGC CGAGGATGCG
GAAGAGGGCA ACGCGCGCAC ACCGCGCCGC GAACCTGAAC CTGGAAGCCT GGCGCGCTCG
GTCGATGACA CAGTGCTGCG CCGCGTGGTC GATGCATCGC CCGACGCGAT CGTCGGCGTC
GATGTCGCAC GCCGGATCAC GAGCTGGAAC CCGGCCGCGC GGCGCCTCTT CGGCATCGAC
GCGGCGGCGG CGATCGGGCA CGACGTCACG ACGCTGATCG CGCCGCGCTG GCTGCGGTTG
CATCCCGTTC CCGCATCGTT CGCGGACGCG GGCGCGCCGG CCGGCCCGCT CGACATCCTG
TGCCTGCGCC GCGACGGCAG CCGTTTTCGC GCGACCTTCA CGGCGTCCCC GATCGTCGAC
GCGCAAGGCA ATTGCACCGG CCTGTCGATG ACGCTGCGCG AGGCGCGCGA ACGCCGCCGC
TGCGAGCAGC GCGATCTGCG CATGTTGCGC GGCGCGCGCG ACGCGCGCGT GCAGGCCGAC
GAGTCGAACC GGATGAAGGA CGAGCTGCTG GCTACCGTAT CGCATGAACT GCGCACCCCG
TTGAACGTGA TCTACGGATG GGTCGAGGTG CTGCGCAGCG GCGAGGGGCA GGGCTTCGCG
CATCAGGCGA TCGACGCGAT CGATCGCAGC GCGCGATCGC TGTCGCGGAT GGTCGGTGAC
CTGCTCGACG CGTCATCGCT CGCGACGGGC CGGGTGCGGC TCGAACGCAC GCCGGTGGAC
CTCGTGCGGA TCGTGCAGGA GTCCGTGCGC GAAATCGGCG AGACCGCGGA GGCGAACGGC
CTCGATTTGT CGACCGAGTG CGCGATGCCC AGCTGCGTGA TCGCCGCGGA CGCCGAGCGC
CTGCGCCAGT TGCTGTCGAA CCTGTTGTCG AATGCGATCA AGTTCACGCC GCGGGGCGGA
CGCATCAAGG TGTCGTTGAA TCCGGCCGGC GCGCGCGTGC GGCTATCGGT CGCCGATACG
GGGCAAGGTA TTTCCGCGGA ACGCCTGCCG CACCTGTTCG ACACGTTCAG CCGGCCGGAA
GGCGCGCCCG CGTTGCCGAA ACGCGGCTTA GGACTCGGCC TGTCGATCGT GCGCAACATC
GCGCGGCTGC ACGGCGGCGA AGTCGCGGCG GCGAGCGAAG GCGCCGGCCG CGGTACGACC
GTGACCGTCA TGCTGCCGGC GGACCTGGGT GCCGACGATC CGACCGGCCA CCCGGTACGG
CCGAGCGGGG CGTCGACGGC GGTCGCGCTC GACGGCCGGC GCGTGCTGGT GGTCGACGAC
GACGCGACGT CGCGCGCCAG CCTCGCGGCC GCGCTCGAAA CGTTGGGCGC CGAGGTGTCG
ACCGCGCAAT CGGGACACGA CGCGCTCGAC GTGGTCGCGC AGCAGCACCC GAGCGTCGTG
CTGTCCGATC TCGCGATGCC GGACGGCGAC GGCTTCTGGC TGCTCGACCA CATTCGCGAT
TTGCCGGACG GCGGCGGGCG CCTGCCCGTC GTCGCGGTGA CCGCGCATGC GGGCACGGCG
GACCGCAGCC GCGTGATGGC CGCCGGCTTC GACGCGTATC TGTGCAAGCC GGTCGACGTT
CCGACGCTGG CCAGCGTGAT CGTCGACGTA TCGCCCGCCG ACGCGACGGG CGGCACCGGG
CGGCGCCACT GA
|
|---|
| Protein sequence | MRTFTRELFR QGIWVVLAVG VAAVLQAWAI HVIGMHEPFA PLPFYAGVAA AAWLTSFAGG
VAASAVSLAV IGGLWWRNMP LPDLLSQAGA FVAISFVECV LVMAVKPLLA NDRLRGAEDA
EEGNARTPRR EPEPGSLARS VDDTVLRRVV DASPDAIVGV DVARRITSWN PAARRLFGID
AAAAIGHDVT TLIAPRWLRL HPVPASFADA GAPAGPLDIL CLRRDGSRFR ATFTASPIVD
AQGNCTGLSM TLREARERRR CEQRDLRMLR GARDARVQAD ESNRMKDELL ATVSHELRTP
LNVIYGWVEV LRSGEGQGFA HQAIDAIDRS ARSLSRMVGD LLDASSLATG RVRLERTPVD
LVRIVQESVR EIGETAEANG LDLSTECAMP SCVIAADAER LRQLLSNLLS NAIKFTPRGG
RIKVSLNPAG ARVRLSVADT GQGISAERLP HLFDTFSRPE GAPALPKRGL GLGLSIVRNI
ARLHGGEVAA ASEGAGRGTT VTVMLPADLG ADDPTGHPVR PSGASTAVAL DGRRVLVVDD
DATSRASLAA ALETLGAEVS TAQSGHDALD VVAQQHPSVV LSDLAMPDGD GFWLLDHIRD
LPDGGGRLPV VAVTAHAGTA DRSRVMAAGF DAYLCKPVDV PTLASVIVDV SPADATGGTG
RRH
|
|---|
| |