Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_4160 |
Symbol | |
ID | 6180248 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | + |
Start bp | 1202808 |
End bp | 1204025 |
Gene Length | 1218 bp |
Protein Length | 405 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641683929 |
Product | porin |
Protein accession | YP_001810840 |
Protein GI | 172063189 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.396932 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.277302 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAGC GCGTCGCTTT CGCCATGACG GCAGTGGGTC TCGCAGCCGC TACCGCAGCC CACGCCCAGA GCAGCGTCAC CCTGTACGGT ATCGTCGATA ACGCTATCGC GTACCAGAAC AACTCGTCGG CAACCGGCGC GACCACGGGT GGTCACTCGA AGGTTCAGAT GGCCACCGGC ATTTGGGCGG GCAGCCGCTT CGGCCTGAAG GGCAGCGAAG ACCTCGGCGG CGGCACGAAG GCGATCTTCC AGTTGGAAGC CGGCTTCAAC GCGAACAACG GCTCGTCGCA ATGGACGAAC GGCATCTTCA CGCGTCAGGC ATGGGTCGGC CTGAGCAACC AGACGTACGG TACGCTGACG GCAGGCCGCC AGTACACCGC GTACTACACG CTGCTGTCGC CGTACAGCCC GACGACCTGG CTGACCGGCT ACTACGGCGC GCACCCGGGT GATATCGATT CGCTGGATAC CAGCTACCGC GCGAACAACT CGCTCGTCTA CATGTCGCCG AAGTTCTATG GCTTCACGGT CGGCGGTTCG TACTCGTTCG GTGGCGTCGC AGGCAGCGTG AACCGCGGCT CGACGTGGAG CGCGGCGATC CAGTACCTGA ACGGCCCGGC AGGCATCGCG GTCGGCTTCC AGCGTATCAA CAACGCGACG CTCGGCGGCG GTGTGTGGGG CGCGAACTCG ACCGCGCAGA ACGGTCTGGA CACGAGCGGC AACGGTGCAG AGCAGGCCGT GTCGTCGATC AACAACGGCT ACCGGACGGC ACAGGCGCAA CAGCGTCTCG CGGTGACGGC AGGCTATCAG TTCACGCCGG CATGGGACGT TTCGGTTTCG TACTCGAACG TGCAATACAT CCCGGGTACG CTGTCGGGCT TCCGGAACAC GGCAATCTTC AACACGGCAG GCGCCGTGCT GCACTGGAAG GCAGCGCCGC AGTGGGACTT CGCGGCAGGC TACTCGTACA CGCGTGCGAC CGAGTCGAAC GGCATCTCGA GCTCGGCCAA GTACCATCAG GTCACGCTGT CGCAGTACTA CAGCCTGTCG AAGCGCACGG GCCTGTACGC AGTTGAGGCT TATCAGCACG CGAGCGGCAA CACGCTCACC CCGACGGGCG GCGTGATCCT CGCGACGACG TCGACGGGCG ACGGCGTGGG CGCGGGTTCG AAGCAGAACC AGATCGCGGC CGGCGTCGGC CTGATCCACC GCTTCTAA
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Protein sequence | MKKRVAFAMT AVGLAAATAA HAQSSVTLYG IVDNAIAYQN NSSATGATTG GHSKVQMATG IWAGSRFGLK GSEDLGGGTK AIFQLEAGFN ANNGSSQWTN GIFTRQAWVG LSNQTYGTLT AGRQYTAYYT LLSPYSPTTW LTGYYGAHPG DIDSLDTSYR ANNSLVYMSP KFYGFTVGGS YSFGGVAGSV NRGSTWSAAI QYLNGPAGIA VGFQRINNAT LGGGVWGANS TAQNGLDTSG NGAEQAVSSI NNGYRTAQAQ QRLAVTAGYQ FTPAWDVSVS YSNVQYIPGT LSGFRNTAIF NTAGAVLHWK AAPQWDFAAG YSYTRATESN GISSSAKYHQ VTLSQYYSLS KRTGLYAVEA YQHASGNTLT PTGGVILATT STGDGVGAGS KQNQIAAGVG LIHRF
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