| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4159 |
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| Symbol | |
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| ID | 6181469 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | + |
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| Start bp | 1201273 |
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| End bp | 1202337 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641683928 |
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| Product | squalene/phytoene synthase |
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| Protein accession | YP_001810839 |
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| Protein GI | 172063188 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.283896 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.280623 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGACTC ATACCGATCC CGCCTATCTG CTCGGCGACC TGCTGAAGAA CGTTTCCCGC
TCCTTTTACC TGACGCTGCG CGTGCTGCCC GACGGCATGC GCGAGCCGGT CGGCCTGGCC
TACCTGCTTG CGCGCGCGGC CGACACGATC GCCGACACGG CGCTCGTCGC GCCCGAGCGT
CGCGCGGCGC TGCTGACCGA CCTGCGCGAC GAGATCGAGC GGCTCGGCGA CGGCGCGGCG
CTGTCGCGCG CGCTCGAGGA CGTCACGCGG ATGCAGACGG ATTCGCACGA ACATATGCTG
CTCGCGTCGA TGAAGCCGAT GCTTGCGTTG CTGCGCGCGC AGCCGGACGC GGACCGCGCA
TCGATCCGCA AGGTCGTCGC GACGCTGACG TCGGGGATGG AATTTGACCT GCGCACATTC
CCCGACGAGC AGTCGGGGCA GGTCGCGTCG CTGCCGAGCC GTGACGAACT CGATCGCTAC
ACGTATCTGG TCGCCGGCTG CGTCGGTGAA TTCTGGACCG ACATGACCGG CGCGCACACG
CGGGCCGCGC GCGGCTGGGA CTTCGCGGAC ATGCGCGAGA AGGGCATCCG TTTCGGCAAG
GCGCTGCAGA TGACCAACAT CCTGCGCGAC TGCGCGAAGG ACCTGCGGAT CGGCCGCTGC
TACCTGCCGG ACGACGTGCT GGCCGAGCAT CGCATCGGCG TCGCCGATCT GATGTCGCCC
GATGCGTCGG CCCGCGCGCG CGGCGTGCTG GTCGAGCTGT TGCGCACGAC GCTCGCGCAG
TATCGCGACG CGTGCTTCTA TACGCAGGCG ATTCCGCGCC GCTTCGTGCG TCTGCGGCTC
GCGTGCCTGT GGCCGATCAT GATCGGCCTC GAAACGCTCG CACTGCTGGC CGGCCACGAC
GCGTGGCTCG ATCCGGCGCG GCCGGCGAAG GTGCCGCGCA AGCGGATCTA CCGGATCATG
GCGTCGTCGC TCGCGCTCGT CGGTTCCAAC GCGGCGATCC GTGCGCGCAT CAACGCGCTG
GTCGACGCGG TGAACGCGCG GATCGCGGCA CCCGCGTCGC ATTGA
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| Protein sequence | MTTHTDPAYL LGDLLKNVSR SFYLTLRVLP DGMREPVGLA YLLARAADTI ADTALVAPER
RAALLTDLRD EIERLGDGAA LSRALEDVTR MQTDSHEHML LASMKPMLAL LRAQPDADRA
SIRKVVATLT SGMEFDLRTF PDEQSGQVAS LPSRDELDRY TYLVAGCVGE FWTDMTGAHT
RAARGWDFAD MREKGIRFGK ALQMTNILRD CAKDLRIGRC YLPDDVLAEH RIGVADLMSP
DASARARGVL VELLRTTLAQ YRDACFYTQA IPRRFVRLRL ACLWPIMIGL ETLALLAGHD
AWLDPARPAK VPRKRIYRIM ASSLALVGSN AAIRARINAL VDAVNARIAA PASH
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