| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4049 |
|---|
| Symbol | |
|---|
| ID | 6180511 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 1071790 |
|---|
| End bp | 1072740 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641683819 |
|---|
| Product | RpiR family transcriptional regulator |
|---|
| Protein accession | YP_001810730 |
|---|
| Protein GI | 172063079 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1737] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.00364013 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.771447 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCCTC TCGCTCCGCA CGAAGCCAGT CAGGATGAAT CCGCGATCGC GGAGCGCATC
GCGTCGGCCA TGCCGCGGAT GACGCCGATC CATCGCCGGA TGGGCGAGTT CGTGCTCGCG
AATCCCTTTC GCGCGGCGAC GATGCGGATC GACGAGCTCG CGCAGGCGGT CAATGCATCG
ATCGCGACCG CGAACCGCTT CGCGAAGGCG CTCGGCTTCG ACGGCTATCC GGCGATGCGC
GCGGCGCTCG TGCGCGGCTT CGAGGCGACG CTCGGCCCCG TCGAGCGGCT GCGTTCCGCG
CAGGAGCAGG AACAGGAGCA GGGCGTTCGC GGCGCCGCAT GGATCGATGC GGTGTTCGAC
CAGGCCATCG AGAACATCGA GAACACGCGT GCGCGGCTGG ATGCGACCGA CGTCGAGGCG
GCCGTCGAGG CGATCGTCGG CGCGCGGCGC GTGCTGATCC TCGGCGCCGG GTCGAGCGCG
TTTCTCACCG GCTTGATGGA ACACGGCTTG TCGGTGTGTC ACGACAACGT GCAGTCGCTG
GCGCTGCTCG GCGGCCCTAC GCATGCGGCG CGGCGCTTGT ATACGGCCGA CTCGCGCGAT
CTCGTGATCG CGCTCGCGTT TCCGCGCTAC GTGAAGGACA CGATCGAGCT GGCACGCCGC
GCGGCCGCGC GTGGCGCACG CGTGCTCGGC ATTTCCGACG GGCCGGGCTC GCCGCTTGCG
CCGGTCGCGT CGCTGAACCT GTACGTGAAA GCCCAGCGGC GTTTCGCGGC CACGTCGGAA
GCGGCCGTGC TGACGATGAT CGAGGCGCTG ATCGATGCGG TCGCGCTGCG CACGCACCGC
TCCGCGAAGT CCGCCGCCGA AATGACCGAA TTCCTGTTGC CGTGGCTGAT GCAGCCGCAA
GCGGCGCTGC CGGCCGCCAA CTCTTCTTCC TCCGGTCCGA AAAAATCATG A
|
|---|
| Protein sequence | MTPLAPHEAS QDESAIAERI ASAMPRMTPI HRRMGEFVLA NPFRAATMRI DELAQAVNAS
IATANRFAKA LGFDGYPAMR AALVRGFEAT LGPVERLRSA QEQEQEQGVR GAAWIDAVFD
QAIENIENTR ARLDATDVEA AVEAIVGARR VLILGAGSSA FLTGLMEHGL SVCHDNVQSL
ALLGGPTHAA RRLYTADSRD LVIALAFPRY VKDTIELARR AAARGARVLG ISDGPGSPLA
PVASLNLYVK AQRRFAATSE AAVLTMIEAL IDAVALRTHR SAKSAAEMTE FLLPWLMQPQ
AALPAANSSS SGPKKS
|
|---|
| |