| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3997 |
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| Symbol | |
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| ID | 6180792 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 1001230 |
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| End bp | 1003323 |
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| Gene Length | 2094 bp |
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| Protein Length | 697 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641683767 |
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| Product | polysaccharide deacetylase |
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| Protein accession | YP_001810678 |
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| Protein GI | 172063027 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.695216 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.336374 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATCCC GACGGACCTT CATGTGCGGA TGCATGGGCG CATTTGCCGC CTGTTCGCTG
TTCCCGGGCG TGACCAATGC CAAGATGATC GATCTGCTGC CGCCGTCCGA TCCGGCCGAC
GGCAAGACGT TTCGCGTGAT CTGCCTGCAT GACGTGCGTG ACAACCTGAT GGCGTCGTTC
AACTCCCCGT CGGCGATAGT CGACCCATTC GCGGTCGATA CCGGCACGCT GACCGCGGTC
TTCTCGTGGC TGCAGACCAA CAACTACCAC ACCATCACGG TCAGGCAGAT CGAGGAGTCG
CGGCACGGCG GCAAGCCGCT GCCGCCGCGC TCGGTGCTGC TCACGTTCGA CGACGGATTT
CGCAGCCACT ACACGAAGGT GCTGCCGCTG CTCGAGCGCT TCAAATATCC AGCCGTGATG
GGCATCGTCA CCGCGTGGAT CGATACACCG CCGGATACGC CGATCCGCAT CAGCGACAAG
GTCCAGTTGC CGCGCGACTA CTTCCTGTCG TGGGACGAGG TGAAGAAGCT CGGCCAGTCG
CCCTTCGTCG AGCTCGGCTG CCACACCCAC AACCTCCATC ACGGCGCGAT CGCGAATCCG
CAAGGCAACG AGTTGCCGGC GACCACCTCG CACCTCTACC TGCAGGACCA GAAGCGCTAT
GAAACCGACG CCGAATTCGA AGCGCGCGTG CACAACGACC TCCAGACGTG CGTGCGGCAG
ATCCGCGAAC ACACCGGCAT CGTCGCTCGC TCGATGGTGT GGCCATACGG TGCGGAAAAC
CAGCCCGTGC GCAGGATATC GACGTCGCTC GGCATGGACA TCCAGTTCAG CCTCGACGCC
GGTCCGAATA CGCCGGACGT GCCGCTGGAC CGGTTGAGAC GGATCCTGAT GATGTACGAC
GTCGACATCG GCGGGTTCGA GCGCTCGATG CGCGAACCGG CGTCCAACCG CGGCGACGTC
GACGTGCCCG AGCGCACCGT GCAGGTCGAT CTCGACCAGG TCTACGATCC GGACCCCGCG
CGGCAGGAAG CGAATCTCGG CAAGCTGATC GAACGCATCT ACCGGATGCA GCCGAAATCG
GTGTACCTGC AGGCATATGC GGACCCGAAA GGGACCGGCG TGGCCGAAGC GGTGTATTTC
CCGAACCGGC ACCTGCCGAT GCGCGCCGAC CTGTTCTCGC GCGCCGCGTG GCAGCTCAAC
ACGCGCGCCA ACGTGCAGGT GTACGCATGG ATGCCGGTGC TCGCGTTCCG GCCGCCGGCG
GACAAGCAGC GCGGGATCGA GGCCGTGAGC GCCTACGGCG GCGCGCCGGC CCGCGAGAAT
GGCACGCGCG TGTTCCGGCT GAGCCCGTTC GATCCGGAAG CGCGGCTGAT GATCCAGCAG
ATCTACGAGG ATCTCACCAA GCACGCATCG TTCAGCGGCA TCCTGTTCAG CGACGACGCC
GTGCTCGACG ACTACGAGGA TGCCGGCAAG CATGCGCTGC GCACCTATTC GCAATGGGGG
CTGCCGGCCG ATATCGGCAA GATCCGCGAG AACCCCGACC TGATGAAGCG CTGGACGCGC
CAGAAGTCGC GCTACCTGAT CGACCTGACC CGCCAGCTCT CGCAGATCGT GCTCGCCCAC
CAGAATGCGG GCGACGTGCT GACCGCCCGC AACATCTTCG CGATGCCGGT GCTCAAGCCC
GAATCGGAAA CGTGGTACGC GCAGAACTAC GACGATTTCC TCGTGACCTA CGACTACGTC
GCGCTGATGG CGATGCCGTA CATGGAACAG GCAAAGGACC CAGAAGGCTG GCTGGACCAG
CTCGTGCAGG CTGTCCATGC GAAGCCGCGC GGCCTGGAGC GCACCGTGTT CGAACTGCAG
TCGTACGACT GGCGCGCGCG CAAGGCCGTG CCGGCCGGCA CGCTGCTCGC GCAGATGCGG
CGGCTGCGCA GCAAGGGCGC GGTGAATTTC GGCTACTACC CCGACAACTT CCTGAACGGG
CAGCCGCAGC TCGAAGCGAT GCGCGACGTG ATGTCGCTGA AGTCCCGCCT CGACCAGAAC
TCGATCAACG CGCTGATGCA GATGCAGCAC ACGCCCGGAA CCAAGACGCC ATGA
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| Protein sequence | MQSRRTFMCG CMGAFAACSL FPGVTNAKMI DLLPPSDPAD GKTFRVICLH DVRDNLMASF
NSPSAIVDPF AVDTGTLTAV FSWLQTNNYH TITVRQIEES RHGGKPLPPR SVLLTFDDGF
RSHYTKVLPL LERFKYPAVM GIVTAWIDTP PDTPIRISDK VQLPRDYFLS WDEVKKLGQS
PFVELGCHTH NLHHGAIANP QGNELPATTS HLYLQDQKRY ETDAEFEARV HNDLQTCVRQ
IREHTGIVAR SMVWPYGAEN QPVRRISTSL GMDIQFSLDA GPNTPDVPLD RLRRILMMYD
VDIGGFERSM REPASNRGDV DVPERTVQVD LDQVYDPDPA RQEANLGKLI ERIYRMQPKS
VYLQAYADPK GTGVAEAVYF PNRHLPMRAD LFSRAAWQLN TRANVQVYAW MPVLAFRPPA
DKQRGIEAVS AYGGAPAREN GTRVFRLSPF DPEARLMIQQ IYEDLTKHAS FSGILFSDDA
VLDDYEDAGK HALRTYSQWG LPADIGKIRE NPDLMKRWTR QKSRYLIDLT RQLSQIVLAH
QNAGDVLTAR NIFAMPVLKP ESETWYAQNY DDFLVTYDYV ALMAMPYMEQ AKDPEGWLDQ
LVQAVHAKPR GLERTVFELQ SYDWRARKAV PAGTLLAQMR RLRSKGAVNF GYYPDNFLNG
QPQLEAMRDV MSLKSRLDQN SINALMQMQH TPGTKTP
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