Gene BamMC406_3876 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_3876 
Symbol 
ID6180536 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand
Start bp871626 
End bp872783 
Gene Length1158 bp 
Protein Length385 aa 
Translation table11 
GC content64% 
IMG OID641683647 
Productporin 
Protein accessionYP_001810559 
Protein GI172062908 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.311637 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAAAC TCGCTCTCTC GACCCTCTCG CTCGCCCTGC TGGGCGCCGC TGGCGCTGCT 
CACGCTCAGT CGAGCGTGAC GCTGTACGGC GTGATCGACA CGTCGATCGC ATGGGTTCAC
GGCAACAACG GTCAAGCCAA CAACTCGTGG CAAATGCTGT CGGGCAACCT GCAAGGCAGC
CGTTGGGGCC TGAAAGGTGC TGAAGACCTC GGCGGCGGCC TGAAGGCGAT CTTCCAGTTG
GAAAACGGTT TTGATCCGGG CACGGGCCAC CTGAACCAGG GCGGTCGCAT GTTCGGTCGC
CAGGCATTCG TCGGCCTCCA GAGCGACCAG TACGGTACGC TGACGCTCGG CCGCCAGTAC
GACCCGCTGG TCGACCTGGT CCAGGCAGTG ACGGCTGACA ACTACTTCGG CAGCGTGATG
GCAACGCCGG GCGACGTCGA CAACAACGAC AACTCGCTGC GCGTCAGCAA CGCGATCAAG
TACACGTCGC CGGTCTGGGC AGGCTTCCAG GTCGAAGGTA TGTACGCCCT CGGCGGCGTT
GCAGGCAAGA CGGGTTCGGG CCAGACGTGG TCGGTCGCGG CTGCCTACAA CAACGGCCCG
GTCGGCGTTG CAGCAGGCTA CTTCTACGCA GCCAACCCGT CGCCGACGAC CACTCCGGGT
CGCCCGGGCT GGGGTTCGAC GACGTCCGAC GCGATCTTCG ACGGCCCGAT CAACCTTGGC
TACCAGACGG CGAAGTCGAT CGCCATCGCA CAAGTCGCAG GTCAGTACGC ACTGGGCCCG
GTGACGTTCG GCCTCGGCTA CAGCAATGCA CAGTACAAGC CGGACGCATT CTCGGGCTTC
GGTTCGACCG AAAAGTACAA CACGGGCCGC GCGTTCGTGA CGTACCAGGT CACGCCGCCG
CTGCTGCTGG GCCTCGGCTA CTCGTACACG AAGGCGAGCG GCGACACGAG CGCGAAGTAC
CATCAAGTCG GTGTCGGCGC GGACTACTCG CTGTCGAAGC GCACGGACAT CTACCTGGTT
GGCGCATACC AGCACGCGAG CGGTACGCAG CTCGTCGACG GCGTGCAGCA AAGCGCGCAA
GCGTCGATCG CTTCGTACGG CTTCGCCGGC AAGAGCTCGG CCGAACTCGT CGCACTCGGC
ATTCGTCACA AGTTCTAA
 
Protein sequence
MKKLALSTLS LALLGAAGAA HAQSSVTLYG VIDTSIAWVH GNNGQANNSW QMLSGNLQGS 
RWGLKGAEDL GGGLKAIFQL ENGFDPGTGH LNQGGRMFGR QAFVGLQSDQ YGTLTLGRQY
DPLVDLVQAV TADNYFGSVM ATPGDVDNND NSLRVSNAIK YTSPVWAGFQ VEGMYALGGV
AGKTGSGQTW SVAAAYNNGP VGVAAGYFYA ANPSPTTTPG RPGWGSTTSD AIFDGPINLG
YQTAKSIAIA QVAGQYALGP VTFGLGYSNA QYKPDAFSGF GSTEKYNTGR AFVTYQVTPP
LLLGLGYSYT KASGDTSAKY HQVGVGADYS LSKRTDIYLV GAYQHASGTQ LVDGVQQSAQ
ASIASYGFAG KSSAELVALG IRHKF