| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3861 |
|---|
| Symbol | |
|---|
| ID | 6180427 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 852985 |
|---|
| End bp | 854217 |
|---|
| Gene Length | 1233 bp |
|---|
| Protein Length | 410 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641683632 |
|---|
| Product | O-succinylhomoserine sulfhydrylase |
|---|
| Protein accession | YP_001810544 |
|---|
| Protein GI | 172062893 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
|---|
| TIGRFAM ID | [TIGR01325] O-succinylhomoserine sulfhydrylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGGCG GCGCGACCCT CGAATACGGA AAACGGAACA TGGACGACTC CCTCAACTTC
GACACGCTCG CCGTGCGCGC GGGCACGCTG CGTAGCAGCG ACTTCAACGA GCACTCGGAA
GCGCTGTTCC TCACGTCGAG CTTCTGCTTC AAGAGCGCGG CCGAGGCCGC CGAGCGCTTC
GCGAATTCGG AAGACTATTT CACCTATTCG CGCTTCACGA ACCCGACCGT CACCATGTTC
CAGGATCGTC TCGCCGCGCT CGAAGGCGGC GAGGCCTGCA TCGCGACGGC GTCGGGCATG
GCCGCGATCA TGTCGGTCGT GATGTCCGCG CTGCAGGCGG GCGATCACCT CGTCAGCTCG
CGCAGCCTGT TCGGCTCGAC GCTCGGGATG TTCTCGCAGA TCTTCAGCAA GTTCGGCATC
ACGACGACCT TCGTCGACCC GACCGACCTG AACGCATGGC AGGAAGCGGT GCGGCCCGAA
ACGAAGATGT TCTTCCTCGA AACGCCGTCG AACCCGCTGA CCGAGCTCGC CGACATCGAG
GCGATCGGCA AGATCGCGAA GGCGGCGAAC GCGCTGTTCG TCGTCGACAA CTGTTTCTGC
AGCCCGGTGC TGCAGCAGCC GCTGAAGCTC GGCGCGGACG TCGTGATGCA CTCGGCGACG
AAGTTCCTCG ACGGGCAGGG CCGCGTGCTC GGCGGCGCGC TGGTCGGCTC GAAGGCATTC
ATCATGGGCA AGGTGTTCCC GTTCGTGCGC AGCGCGGGCC CGACGTTGTC GGCGTTCAAC
GCGTGGGTGC TGCTGAAGGG GATGGAAACG CTGTCGCTGC GCGTCGAGAA GCAGTCGGCG
AACGCGCTGG AAATCGCGCG CTGGCTCGAT TCGCATCCGG CCGTCGCGCG CGTGTTCTAT
CCGGGGCTCG AATCGCATCC GCAGCATGAA CTCGCGAAGC GCCAGCAGAA GGCGGGCGGC
GCGATCGTAT CGTTCGAGCT GAAGGGCGAC ACGCCGGAGC AGCAGCGCGC GAACGCGTGG
CGCGTGATCG ACAGCACGAA GCTGATCTCG ATCACCGGCA ACCTCGGCGA TACGCGCACG
ACGATCACGC ATCCGGCGAC GACGACGCAC GCACGCATCA CGCCGGAAGC GCGTGCGGCC
GCGGGCATCA CCGAAGGGTT GATCCGCCTC GCGGTCGGCC TGGAGGATGC GGGCGACCTG
CGCCGCGATC TTACGCGCGG CCTCGAGGGC TGA
|
|---|
| Protein sequence | MTGGATLEYG KRNMDDSLNF DTLAVRAGTL RSSDFNEHSE ALFLTSSFCF KSAAEAAERF
ANSEDYFTYS RFTNPTVTMF QDRLAALEGG EACIATASGM AAIMSVVMSA LQAGDHLVSS
RSLFGSTLGM FSQIFSKFGI TTTFVDPTDL NAWQEAVRPE TKMFFLETPS NPLTELADIE
AIGKIAKAAN ALFVVDNCFC SPVLQQPLKL GADVVMHSAT KFLDGQGRVL GGALVGSKAF
IMGKVFPFVR SAGPTLSAFN AWVLLKGMET LSLRVEKQSA NALEIARWLD SHPAVARVFY
PGLESHPQHE LAKRQQKAGG AIVSFELKGD TPEQQRANAW RVIDSTKLIS ITGNLGDTRT
TITHPATTTH ARITPEARAA AGITEGLIRL AVGLEDAGDL RRDLTRGLEG
|
|---|
| |