| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3480 |
|---|
| Symbol | |
|---|
| ID | 6179489 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 402520 |
|---|
| End bp | 407382 |
|---|
| Gene Length | 4863 bp |
|---|
| Protein Length | 1620 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641683249 |
|---|
| Product | YD repeat-containing protein |
|---|
| Protein accession | YP_001810163 |
|---|
| Protein GI | 172062512 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3209] Rhs family protein |
|---|
| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.219558 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGGAA CCGCCGCACC TTCTACCCCA CAGCGCCAGA TTCCTAAGGC ACTTCTTCAG
AATGCCGAAG CACGGCGCGT CATCGTCGGT CCGGTTCCCG CGCCCGGGAC GTCTCCAACG
CTGATCTCGG CCGACGCCGA ATCGGTCGGC AATCACGGCC TCGAAATCTT CGTGCAGTGT
CTGTACATGG TGCCGTTCGT CGGCAATGCG ATGTCGCTGT ACGACGTCGG CGTCGATATC
TACCGGATCT GCAGCGAGCC GGGCGGCATC TCGAAGGTGC TCAATTGGGG GATCCTCGCG
ATCGATGCGA TCGGCGTCGT GCCGGCGGCG GGCAACGCGA CGCGGCCGGC GCGCGCGATC
GTCAAGGAGG TGTTGCTCGC GTTCGCGAAG GGCGCGGGCG CGGCGGTGCT GGTCGACCTG
TTCTGGGCGA CGGCCGGTGG CGACGTGCTT GCGTTCATGG CCGAACTCGA CGTGTCCCTC
GCGAAGTGGA AGACCGACAT CGTCGCAGGC GTGCGCGAAG CCTCGCGCAC GGTGCGCCGC
TTCGTGCTCG ATCCCGTTTC CGTGGCCGAG CAGATGGGAC GGATCAAGAA GAACACGGGC
TTCCTGTCGT GGGTGCCGTC GACGGAGGAG ATCGCGCTCG TCGGCATTGA TCAGTTGCTC
AAGGTGTCGG GGCAGCGCGA CGCGATCGTC GCGTGGCTGG ACGCGTTCGA TCGCGACACG
GGGCCGATGC TCGACCGGGC GTTCGGCAGC GTGGAGGAAG CCGGCAGTCT GCTGTTCATG
GCCGGGCAGA TCACCGCGGA GATCAAGGCC CGCAAGGCAC GCAGGATCCC GTCGCATGTG
GCGCAGGCCG CGCCGGGCAC GATGCGCGAG CCGCACAGGA AGCCAGGCGA GCACCGTGAT
TCGACGCAGA AAGGCGCGGC GCCGAGCCCG CTGCCGGCGA AGAACGGATG CGGGTGCCCG
AAAACGACGA CTCCGAAGCC CGTCAATTAC GCGATGGGCG ACGAGAACCT CGAGCAGACC
GACTTCGTGC TGGACGGCGT CGTGCCGATC ATGTGGACGC GACGCTACCG GTCGAGCCTC
GCGGCCTACG ACGGGAGCCC GCTGGGCGCG CGCTGGAGTA GCGCGTATCA CCTGTCGCTG
GAGGAACGGG ATGGAAGGTT GACGTTCTTC GATCCCGATA GCCGGGCGGT GCCGTTGCCG
CCAGTCGGTA TGGGGGAATC GGTGGAGGTG CCGGCCGAAC AGTTCACGGT GACGCGGCTG
GATGGGCGCC GCATTCGACT GAGCTATCCC GACGGCAGTC GAGAGGATTA CGAACTGCAT
GGCTTCATTG CATCGGCTCG CTACCGCCTC ATCTCCCGCA CGAACCGCGA CGGCCTCGGC
CTGAGCTTCA CCTACAACGC AGCCGGTGAA CTCACGACGA TCAGCGATGG CGTGGCCAAC
GCGATTCGCA TCGACTACGT CGACGGCCGC GTGTCGGCGA TCTACCGCGC GGGCGTCCCT
GGCCTCGCGA ACGAAGCACT CGCGCACTAC ACGTACAGCG CCGAAGGCGA CCTGATCGGC
CACGTCGACA TGCTCGGCTT CCGGCGCACG TATGCGTACG AGCAGCACCT GCTCACGCGC
TATACGGACT TCAACGGCAA TCCCGCGAAT CTGACGTGGG ACTGGCCGGG GCGACGCGAA
GGCGTGCCGG CGCCGGCCGA TGCGCGCTGT GTGCGCACCT GGTACGGCAG CGAAGGGCAG
CACGTCCAGG ACGACACGCG CTTCGAGTAC CACCGTGAAC ACTGGTACAC CAAGGTCACC
GATGCGGACG GTCATGCCAC CACCCACCGC TACGACTTCC ACAACCGGAT CGTGCTGGTC
GAACACCCGG ATGGTTCGAC CGAGTCCTAT GAATGGGACG AACTGAACCG TCTCATCGGC
ACCAAGAACG CGCTGGGTCA CACGCAAACT TTCGCTTACG ACGCGCAGGG GCGCCTCACT
GCCGAAACCG ATGCGCTCGG CAATACGACG CGCACTGAAT ACGATGCTGC TGGTCTGCCC
GTCACGGTAA CGACCGCGGA CGGCCGCGTC ACCCAAACCG AATACGATCC GCTCGGCCGC
CCGGTCTCGG TGACGGATGC GTCAGGTCGT ACGACCCGCT ACGCATGGGG CGTCCAAAGT
GAGCTGCTGT CGTTGACCGA CCCGAAGGGC GGCGTGAAGC GCTTTCGTTA CGACCACGGA
GGACGGCTGG CGGAGGCGAC CGACTGCTCC GGCCACACGA CGTACTACGG ATACGACGAG
CGCGGTCATC TGTCGCGGAT CACCGATGCA GCGGGGCACA TTACGCTGTA CAGCTGCGAT
GCGCGCGGAC AGGTCACTGG CGTCACGCAT CCGGATGGCA CCGAAGAGCG CTTCACGTGG
GACGGCGAAG GCAACCTGCG CACGTACCGC GACGGCGCGC GCCAGATCAC CGAATACATG
TTCAACGCGC GCAGGCAGCC GATCTGGCGC AAGGACGCCG CAGGCCGGGA ACTGGCGTAC
GGATACGACC GACAATGGCG GCTGGACACG CTGACCAACG AGAACCGCGA CCAGATGCGG
TTCAGCTACG ACCAGTTGGG GCGCCTCGCC GAGCAGACGG ACTTCGATGG CGGCACGACC
CGCTACCGGT GGGACGACAC GGGGCAACTG ATCGGCTCGC AGACCGGTGA TATCGACACG
AGCTACGCGC GCGATCCGCT CGGCCGCCTG ACGCGGCGGG AGCTGAAGGG CGCCAGCGGT
CGCGCTCAGG TGATCGAGCG TTTCTATTAC GACGCTCGTG GTCGGCTGAC AACCGCGCAG
GGTTACGGCA GTCGCGTGAC CCTGCACTAT GACGACGCCG ACAACCTGAT CGCGGAAGAA
CAGACGATCT ACCCGGATAC CGACAGTGCC TATACGACCG TGACCCGGCA TGAATATGAC
GTGCTCGGCA ACCGGATCCG CACGCAACTG CCGAATACGC GGACGATCGA CTGGCTGCGC
TACGGCTCGG GTCATCTGCA TGGCGTACTG CTGGACGGCC AGCCCCTGGT GGATTTCGAG
CGTGACGCGT TGCATCGCGA GACCCACCGT CAATATCGGC ATTTCGAGCA GCGGCGCGAA
TACGATCCGC TGGGCCGGCT GAAACGGATG ATCGTGCGTC ACGACGTACA AAGGACGTTA
CCGAAAGACT GGATCGTCGG GCGCGAGTTG CGCTACGACG CGGCGGGCCA GTTGACGCGC
ATCGACGACC GCACGCGCGG CGTCACGGAT TACACATACG ATCCGACCGG GCGTTTGCTG
AAGGCGACGA CGCTGGATTT GAAGGAGGTG TTTGCGTTCG ATCCGGCGGG CAATCCGGTG
GATCCGGAGA ATATCCCGCC GCGCCCGAGC GAGGAAACGA TCGAGTCTGT CACGGCGCGG
ATGCAGCGGC AGATGGCGCA GGATCGCGCG TGGTGGGACG CCCATCCGGG CGAACGATTG
CCGGACGAGC AACTCGCGAA GCGCTTGGGG ATCGCTGAGG AGTTCAATGC GCTGACCAGT
TGGTACGACG CGCTGCCGAA GTGCGTCGGC AATGTGCTGA AGGAACTGAA CCGCACACGC
TACGATCACG ATGCGCAGGG CAACCTGGTG CGCAAGACTG AACCGGGTGG GGTGACGTGG
CTGTACGAGT ACGATGCGGC GAACCGGCTC AAACGGGCCG ATCGTTACCC GAAGCCGCCG
GTGGCGGATG AGGTTGACCG GATCGAGCGG ACGCAAAGCG GCGTGACGTC GATACCGGGT
ACGGTGCGCC CGGAGTTACG CGTGAGCTTC ACCTATGACG CGTTCGGCCG TCGCCGGTTG
AAGGAAGTGG CGAGCAAGAG CGGTAGCGTC GATCGAACGG TGTTCACGTG GGACGGCGAC
GTGCTGTTGA TGGAGGAGCG ATTCCACGTC CCGCCGCCGC AGTTGGGCGA GCGCGATCCG
CTCGCACATC GCGCGCCGCA GGTGGTACGT GAGGATCCGG ATGATGCGTA CTCGGTGCCG
GTGGCGCAGC GGGTCCATAC GCTCGGCGAG CGGCGGCAGT GGCAGGGCGC GTCGCTGTAC
CTGCACGAGC CGGGCACGTT CGTGCCGCTG GCACGGCTGG ACGAGACACT GGTGGAGGCG
GCGTTCGTTG AAACGGGCAC GGACGGTCGG TTCGTGCAGG TGCCAGCGAA GACGCGGCAT
GCGACGCTGT TCTACCAGAA CGATCATCTG GGGACGCCGC AGGAACTGCT GGATGACACG
GGGAGGGTGG TGTGGCTGGG TCGGTATCGG GCGTGGGGCG GTGAGAAGAC GGTGTGGCGG
GAGACGCCGG AGCCGAATGA AGTGGCGAAC GCGATCCGGT TTCAGGGGCA GTATCACGAT
GCAGAGACGG GGCTGCATTA CAACCGGTAT CGGTACTACG ATCCGGGGAG TGGGCGGTTT
GTTAGCAAGG ATCCGATCGG GCTGGCGGGT GGAATCAACG CATGGCAATA CGCGCCTAAC
CCGGTTGGGT GGATTGATCC GTTGGGGCTT TCTGCGGCAT CCGATCTACC TCGGGTGAAA
GGACGAAGTG CGCCACGTGT AGGATCGGTG CTGAATGATG CGGGCTTTGC CAAAACGAAG
GACAATGGCT TGAACGAGAC TTGGAAGCAT GCGGATGGAT CGGAGGTTCG GGTTCATAAA
TACGGAAACA AGTGCCTTTG TCCTTATAGG TCGGGAAATA ACGCGCATGT TCACAAGGAA
GATCCCGCTG GGAATCAACT TAATGATCGT GGACTTGTAT CACTAGATCC AAATGAAACG
CACATTGGTA TCCGTAACCC TGCTGATCTG CCAGCTGTTC GAGGGAGGCC GCACGGATCA
TGA
|
|---|
| Protein sequence | MTGTAAPSTP QRQIPKALLQ NAEARRVIVG PVPAPGTSPT LISADAESVG NHGLEIFVQC
LYMVPFVGNA MSLYDVGVDI YRICSEPGGI SKVLNWGILA IDAIGVVPAA GNATRPARAI
VKEVLLAFAK GAGAAVLVDL FWATAGGDVL AFMAELDVSL AKWKTDIVAG VREASRTVRR
FVLDPVSVAE QMGRIKKNTG FLSWVPSTEE IALVGIDQLL KVSGQRDAIV AWLDAFDRDT
GPMLDRAFGS VEEAGSLLFM AGQITAEIKA RKARRIPSHV AQAAPGTMRE PHRKPGEHRD
STQKGAAPSP LPAKNGCGCP KTTTPKPVNY AMGDENLEQT DFVLDGVVPI MWTRRYRSSL
AAYDGSPLGA RWSSAYHLSL EERDGRLTFF DPDSRAVPLP PVGMGESVEV PAEQFTVTRL
DGRRIRLSYP DGSREDYELH GFIASARYRL ISRTNRDGLG LSFTYNAAGE LTTISDGVAN
AIRIDYVDGR VSAIYRAGVP GLANEALAHY TYSAEGDLIG HVDMLGFRRT YAYEQHLLTR
YTDFNGNPAN LTWDWPGRRE GVPAPADARC VRTWYGSEGQ HVQDDTRFEY HREHWYTKVT
DADGHATTHR YDFHNRIVLV EHPDGSTESY EWDELNRLIG TKNALGHTQT FAYDAQGRLT
AETDALGNTT RTEYDAAGLP VTVTTADGRV TQTEYDPLGR PVSVTDASGR TTRYAWGVQS
ELLSLTDPKG GVKRFRYDHG GRLAEATDCS GHTTYYGYDE RGHLSRITDA AGHITLYSCD
ARGQVTGVTH PDGTEERFTW DGEGNLRTYR DGARQITEYM FNARRQPIWR KDAAGRELAY
GYDRQWRLDT LTNENRDQMR FSYDQLGRLA EQTDFDGGTT RYRWDDTGQL IGSQTGDIDT
SYARDPLGRL TRRELKGASG RAQVIERFYY DARGRLTTAQ GYGSRVTLHY DDADNLIAEE
QTIYPDTDSA YTTVTRHEYD VLGNRIRTQL PNTRTIDWLR YGSGHLHGVL LDGQPLVDFE
RDALHRETHR QYRHFEQRRE YDPLGRLKRM IVRHDVQRTL PKDWIVGREL RYDAAGQLTR
IDDRTRGVTD YTYDPTGRLL KATTLDLKEV FAFDPAGNPV DPENIPPRPS EETIESVTAR
MQRQMAQDRA WWDAHPGERL PDEQLAKRLG IAEEFNALTS WYDALPKCVG NVLKELNRTR
YDHDAQGNLV RKTEPGGVTW LYEYDAANRL KRADRYPKPP VADEVDRIER TQSGVTSIPG
TVRPELRVSF TYDAFGRRRL KEVASKSGSV DRTVFTWDGD VLLMEERFHV PPPQLGERDP
LAHRAPQVVR EDPDDAYSVP VAQRVHTLGE RRQWQGASLY LHEPGTFVPL ARLDETLVEA
AFVETGTDGR FVQVPAKTRH ATLFYQNDHL GTPQELLDDT GRVVWLGRYR AWGGEKTVWR
ETPEPNEVAN AIRFQGQYHD AETGLHYNRY RYYDPGSGRF VSKDPIGLAG GINAWQYAPN
PVGWIDPLGL SAASDLPRVK GRSAPRVGSV LNDAGFAKTK DNGLNETWKH ADGSEVRVHK
YGNKCLCPYR SGNNAHVHKE DPAGNQLNDR GLVSLDPNET HIGIRNPADL PAVRGRPHGS
|
|---|
| |