| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3310 |
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| Symbol | |
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| ID | 6181461 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 220814 |
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| End bp | 223549 |
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| Gene Length | 2736 bp |
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| Protein Length | 911 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641683082 |
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| Product | 2-oxoacid dehydrogenase subunit E1 |
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| Protein accession | YP_001809996 |
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| Protein GI | 172062345 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG2609] Pyruvate dehydrogenase complex, dehydrogenase (E1) component |
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| TIGRFAM ID | [TIGR00759] pyruvate dehydrogenase E1 component, homodimeric type
[TIGR03186] alpha-ketoglutarate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.641132 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.0449553 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGATC TGTCGAACGG TATCGAACAC GCGCAGCGCG CGGCCCTCGC GCGCGCCGAC
GAGGATCCGG AAGAAACCGC CGAATGGCTC GAGGCGCTCG ATGCGGTGGT CGCGCACGTC
GGCCGCGACC GCGCGCAATA CCTGTTCGAC CGGCTCGCCG AGCATGCGCG CACAACCGGC
CTCGCGTCGC CGCGCGCACC CGTCACGCGC TACCTGAACA CGATTGCGCT CGCCGAGCAG
CCGCCGTATC CGGGCGACCT CGACCTCGAG GAACGGCTGT CGGCCGCGTT GCGCTGGAAC
GCGCTCGCGA TGGTCGTGCG CGCGAATCGC GCGTACGGCG AGCTCGGCGG CCACATCGCG
AGCTATGCGT CGGCGTCCGA CCTGTTCGAA ACCGGCTTCA ACCACTTCTT CCGCGCGGCG
TCGCCCGCGA CCGGCGACGC ACCCGGCACG GGCGGCGGCG ATCTCGTGTA CTTCCAGCCG
CATTCGTCGC CGGGCGTCTA TGCGCGCGCG TATCTCGAAG GCTTCCTCAG CGAGGATCAC
CTGAAGCATT ACCGCCGCGA AATCGCCGGC CCGGGCCTGT GCTCATATCC GCACCCGTGG
CTGATGCCCG ATTTCTGGCA GTTCCCGACC GGCTCGATGG GGATCGGCCC GATCAACGCG
ATCTACCAGG CGCGCTTCAT GCGCTACCTG CAGCATCGCG GCCTCGCGAA CACCGCGGGC
CGCACCGTGT GGGGCTTCTT CGGCGACGGC GAGATGGACG AACCCGAATC GCTCGGCGCG
CTGTCGCTCG CCGCGCGCGA GGGGCTCGAC AACCTCGTGT TCGTCATCAA CTGCAACCTG
CAGCGGCTCG ACGGCCCGGT GCGCGGCAAC GGCCGCGTGA TCGACGAACT CGAAGCGCAG
TTCGCGGGCG CCGGCTGGAA CACGATCAAG GTGCTGTGGG GCTCCGACTG GGATCCGCTG
TTCGCGCGCG ATCACGCGGG CGCGCTGACA CGCGCGTTCG CCGGCACCGT CGACGGCCAG
TTCCAGACCT TCTCCGCGAA CGACGGCGCA TACAACCGCG CGCGCTTCTT CAGCCAGGAC
CCCGCGCTCG AAGCGCTCGC CGCGCAGCTC ACCGATGCGG AGATCGACCG CCTGCGCCGC
GGCGGCCACG ACGCACGCAA GCTGCACGCC GCGTATGCGC GTGCGCTCGC GCACCGCGGC
CAGCCGACCG TGATCCTCGC GAAGACGATG AAGGGTTACG GGATGGGCGC GGCCGGCCAG
GGCCGGATGA CGACCCATCA GCAAAAGAAG CTCGACGTCG ACGATCTGAA GGCGTTCCGC
GACCGCTTCC GGTTGCCGCT GTCGGACAGC GACGTCGAAC AGTTGAAGTT TTACAAGCCA
GCGGAAGACA GCCCGGAGAT GCGTTACCTG CATGCCCGCC GGGCTGCCCT GGGAGGCTAT
CTGCCCAGAA GGCGGATAGC GGCATCGAAG GGGCCGACCG TCCCTTCGAT GCCGGCCTGG
GGCGCGTTCG CGCTGCACGC GGCCGGCCGC GAGATGTCCA CGACGATGGC GCTCGTACGC
ATGCTCGCCG CGTTGATCAA GGATCGCGAC ATCGGCTCGC ACGTCGTGCC GATCGTGGCC
GACGAAGCGC GCACGTTCGG CATGGCCAGC CTGTTCCGGC AGGTCGGCAT CTACTCGCCG
CTCGGCCAGC GCTACGAGCC GGAAGACCTC GGCTCGATGC TCTACTACCG CGAGGACACG
CGCGGCCAGA TCCTCGAGGA AGGCATTTCG GAAGCGGGTG CGATCTCGTC GTGGATCGCC
GCCGCGACGT CGTACAGCGT GCACGACCTG CCGATGCTGC CGTTCTACAT CTACTACTCG
ATGTTCGGCT TCCAGCGCAT CGGCGACCTG ATCTGGGCCG CCGCCGACCA GCGCTCGCGC
GGCTTCCTCG TCGGCGCGAC GTCCGGGCGA ACGACGCTCG GCGGCGAGGG CCTGCAGCAC
CAGGACGGCA GCAGCCACCT CGCCGCGTCG ACGATTCCGA ACTGCCGCGC GTACGATCCG
GCGTTCGCGT ACGAAGTCGC GACGATCGTC GATGCGGGCA TGCGAGAGAT GGTCGAGCAG
CAGCGCGACG TGTTCTATTA CGTGACCGTC ATGAACGAGA ACTACGCGCA GCCGTCGATG
CCCGACGATG AACCGGCCGC GCGGCGCGAA GGCATCCTGA AGGGCATGCA CCGGCTGCCG
TCCGGTTCGA ACGCGACGGC ACGCGTGCAG TTGCTCGGCT CGGGCGCGAT ACTCGGCGAA
GTGCTCGCCG CGCAGCGGAT GCTGAAGGAC GACTGGGGTA TCGATGCGGC CGTGTGGAGC
GTCACGAGCT TCAGCGAACT GCAGCGTGAC GGGATGGAAG CCGAGCGTCG CACGCGGCTC
GACGACGACG CGCGCTCGAC GCCGTTCGTC ACCGCCGCGC TCGCCACGAC GCGCGGGCCC
GTGGTCGCCG CAACCGACTA TGTACGCGCG GTGCCCGAAC TGATCCGCGC GTATGTACCG
CGCCGCTACG TGACGCTCGG CACCGACGGG TTCGGCCGCA GCGACACGCG CGACGCGCTG
CGCGCGTTCT TCGAGGTCGA TCGCGCGAGC ATCGTGCTCG CCGCGCTGAA GGCGCTGGCG
GATGACGGAG AACTCGATGC GACTATCGTG CGTGACGCTC GCGAACGACT CGGCAAGACT
GTGCAGCAGC CCGGCACGGC GCCTTGGCAG CGCTAG
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| Protein sequence | MTDLSNGIEH AQRAALARAD EDPEETAEWL EALDAVVAHV GRDRAQYLFD RLAEHARTTG
LASPRAPVTR YLNTIALAEQ PPYPGDLDLE ERLSAALRWN ALAMVVRANR AYGELGGHIA
SYASASDLFE TGFNHFFRAA SPATGDAPGT GGGDLVYFQP HSSPGVYARA YLEGFLSEDH
LKHYRREIAG PGLCSYPHPW LMPDFWQFPT GSMGIGPINA IYQARFMRYL QHRGLANTAG
RTVWGFFGDG EMDEPESLGA LSLAAREGLD NLVFVINCNL QRLDGPVRGN GRVIDELEAQ
FAGAGWNTIK VLWGSDWDPL FARDHAGALT RAFAGTVDGQ FQTFSANDGA YNRARFFSQD
PALEALAAQL TDAEIDRLRR GGHDARKLHA AYARALAHRG QPTVILAKTM KGYGMGAAGQ
GRMTTHQQKK LDVDDLKAFR DRFRLPLSDS DVEQLKFYKP AEDSPEMRYL HARRAALGGY
LPRRRIAASK GPTVPSMPAW GAFALHAAGR EMSTTMALVR MLAALIKDRD IGSHVVPIVA
DEARTFGMAS LFRQVGIYSP LGQRYEPEDL GSMLYYREDT RGQILEEGIS EAGAISSWIA
AATSYSVHDL PMLPFYIYYS MFGFQRIGDL IWAAADQRSR GFLVGATSGR TTLGGEGLQH
QDGSSHLAAS TIPNCRAYDP AFAYEVATIV DAGMREMVEQ QRDVFYYVTV MNENYAQPSM
PDDEPAARRE GILKGMHRLP SGSNATARVQ LLGSGAILGE VLAAQRMLKD DWGIDAAVWS
VTSFSELQRD GMEAERRTRL DDDARSTPFV TAALATTRGP VVAATDYVRA VPELIRAYVP
RRYVTLGTDG FGRSDTRDAL RAFFEVDRAS IVLAALKALA DDGELDATIV RDARERLGKT
VQQPGTAPWQ R
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