Gene BamMC406_3099 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_3099 
Symbol 
ID6177890 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp3440838 
End bp3442502 
Gene Length1665 bp 
Protein Length554 aa 
Translation table11 
GC content64% 
IMG OID641682876 
Productputative inner membrane protein translocase component YidC 
Protein accessionYP_001809790 
Protein GI172062138 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0706] Preprotein translocase subunit YidC 
TIGRFAM ID[TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.462896 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0227553 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATATCA AACGCACCGT CCTATGGGTG ATCTTCTTCA TGTCAGCTGT CATGCTGTAC 
GACAACTGGC AGCGCTCCCA TGGACGCCCG TCGATGTTCT TCCCGAGCGC CACGCAGACG
GCCCCCGCCG CTGCCGGCGG CGCATCGGGC ACGGGCGCGA CGACGACGAC CGCAGGTGAA
GTGCCTGCCG CCGCCGCGGG CACCGCACCG TCGACGACGG CACCGGCCGC ACAGGCGCAG
CTCGTGAAGT TCTCGACCGA CGTCTATGAC GGCGAAATCG ACACGCGCGG CGGCACGCTC
GCGAAGCTGA CGCTGAAGAA GCAGGGCGAC GGCAAGCAGC CCGACCTCTA CATCACGCTG
TTCGACCACA CGGCCGGCCA CACGTACCTC GCACGCACGG GCCTGCTCGG CGGCGACTTC
CCGAACCACA ACGACGTCTA CACGCAGGTC AATGCGGGCC CGACGTCGCT GACGGGCGAC
CAGAACGCGC TGAAGCTGTC GTTCGAATCG CCGGTGAAGG GCGGCGTGAA GGTCGTGAAG
ACCTACACGT TCACGCGCGG CAGCTACGTG ATCGGCGTCG ATACCAAGAT CGACAACGTC
GGCACGGCAC CGGTCACGCC GACGGTCTAC ATGGAACTGG TGCGCGACAA CACGGCCGTC
GAAACGCCGA TGTTCTCGCA TACGTTCCTC GGGCCGGCGG TCTACACGGA CGCGAAGCAC
TTCCAGAAGA TCGATTTCAG CGACCTCGAC AAGAACAAGG CGAACTTCGA GAAGGCGGCC
GACAACGGCT GGGTCGCGAT GGTGCAGCAC TACTTCGCGT CGGCCTGGAT TCCGCAGCAG
GGCGCGAAGC GCGACATCTA CGCTGAAAAG ATCGATCCGG CGCTGTATCG CGTCGGCGTG
AAGCAGCCGG TCGCCGCGAT CGCTCCGGGC CAGTCGGCCG ACGTGCAGGC ACGCCTGTTC
GCCGGTCCGG AAGAAGAGCG CATGCTCGAA GGCATCGCGC CGGGCCTGGA ACTCGTGAAG
GACTACGGCT GGGTGACGAT CATCGCGAAG CCGCTGTTCT GGCTGCTCGA GAAGATCCAC
GGCTTCGTCG GCAACTGGGG CTGGGCGATC GTGCTGCTGA CGGTGCTGAT CAAGGCCGTG
TTCTTCCCGC TGTCGGCCGC GAGCTACAAG TCGATGGCGC GCATGAAGGA AATCACGCCG
CGCATGCAGG CGCTGCGCGA ACGCTTCAAG AGCGATCCGC AGAAGATGAA CGCCGCGCTG
ATGGAGCTGT ACAAGACCGA GAAGGTCAAT CCGTTCGGCG GCTGCCTGCC GGTCGTGATC
CAGATCCCGG TGTTCATCTC GCTGTACTGG GTGCTGCTCG CGTCGGTCGA AATGCGCGGT
GCGCCGTGGA TTCTGTGGAT TCACGACCTG TCGCAGCGCG ATCCGTTCTT CATCCTGCCG
GTGCTGATGG CCGTCTCGAT GTTCGTGCAG ACGAGCCTGA ACCCGACGCC GCCGGACCCG
GTCCAGGCGA AGATGATGAA GTTCATGCCG ATCGCGTTCT CGGTGATGTT CTTCTTCTTC
CCGGCCGGCC TGGTGCTGTA CTACGTCGTG AACAACGTGC TGTCGATCGC GCAGCAGTAC
TACATCACGC GCAAGCTCGG CGGGGTCAAG AAGAAGCCGG CCTGA
 
Protein sequence
MDIKRTVLWV IFFMSAVMLY DNWQRSHGRP SMFFPSATQT APAAAGGASG TGATTTTAGE 
VPAAAAGTAP STTAPAAQAQ LVKFSTDVYD GEIDTRGGTL AKLTLKKQGD GKQPDLYITL
FDHTAGHTYL ARTGLLGGDF PNHNDVYTQV NAGPTSLTGD QNALKLSFES PVKGGVKVVK
TYTFTRGSYV IGVDTKIDNV GTAPVTPTVY MELVRDNTAV ETPMFSHTFL GPAVYTDAKH
FQKIDFSDLD KNKANFEKAA DNGWVAMVQH YFASAWIPQQ GAKRDIYAEK IDPALYRVGV
KQPVAAIAPG QSADVQARLF AGPEEERMLE GIAPGLELVK DYGWVTIIAK PLFWLLEKIH
GFVGNWGWAI VLLTVLIKAV FFPLSAASYK SMARMKEITP RMQALRERFK SDPQKMNAAL
MELYKTEKVN PFGGCLPVVI QIPVFISLYW VLLASVEMRG APWILWIHDL SQRDPFFILP
VLMAVSMFVQ TSLNPTPPDP VQAKMMKFMP IAFSVMFFFF PAGLVLYYVV NNVLSIAQQY
YITRKLGGVK KKPA