| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3032 |
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| Symbol | |
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| ID | 6178924 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 3362962 |
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| End bp | 3365754 |
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| Gene Length | 2793 bp |
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| Protein Length | 930 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641682808 |
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| Product | fimbrial biogenesis outer membrane usher protein |
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| Protein accession | YP_001809724 |
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| Protein GI | 172062072 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGTTCAAG CAGCAAGAAA TTTCGCGCTT GGCGGTGGCC ATGATGTCGA TCTGAGCGTC
TTTCGCCGCC GGCGGGTGGC TTTGGCGGTC AGTCTGGCGT TTGGCATCGG TTTTTCTGGC
GATGACGCAG GCGCGGTAGA ACTGGATTGG CCCGACGTCG GTCAGCAAGC GAGCGGTGAG
CCGGTGATGA TCGTGGCGGC TCGGACCAAC ACGGATCCGG TCATGCAGGT CGCGACTCGC
ACCAACACGG ATCCGGTGAT GCAGGTCGCG GCTCGCGCGC CTACGGAGCC GGCGGCGGTG
GCGTTCAACC CGCGGCTGTT CGCTGGCGGT GGCGTCGACC TGTCGCGTTT TGCGAAAGGC
AATCCGGTCG AGCCGGGCAG TTATGCGGTC GACGTGACGG TCAATGGCAA AGGGCGGGGA
CGTCGCGACG TGCCGTTCCT CGCGGTGCCC GGCAGCGATG TTGCGATGCC ATGCTTCACG
CTCGCGACGC TCGAGGAATT GGGCGTCGAC GGCGACAAGC TCGTGAGGCA GCTTCGGCGA
TCGAAGCAGG ACGACGATGC TGGCGCGCCG GCCGCACACG AATTGGCGCC CGACGCCTGT
CTCGCGCTGC GCGACACGAT ACCCGACGCG ACCTACTCGT TCGACAGCGC GGATCTGACG
CTCGATGTGA CGATTCCGCA GACCGTGATG AGCAAGAGGG CCTACGGCTA TGTCGATCCG
TCGCGCTGGG ACGAAGGGAT CAACGTCGGT CTGCTGCAGT ACAACGTCAA CGGATACACG
AGCGAGAGCA ACTTTTTCGG CCACAACTTC AGCAGCTTGT ATACCGGTCT GCAGTCGGGT
GTGAATATCG GGCCGTGGCG TTTCCGTCAC CGCTCGACGC TGAACTGGGC GAGCCGAAGT
GCGGGCGTTT CGTGGCGAAG CCTTGAAACC TTCGTTCAGC GGGACATCAC GGCGCTGCGC
AGCCAGATCG TGCTCGGCGA CAGCTTCACG AGCGGCGACG TATTCGATTC GTTCGGCGTG
CGCGGTGTCC AGTTGTCGAG CGACGACCGC ATGCTGCCGA ATTCGCTGCA GGCTTATGCG
CCGACCATTC GCGGCGTCGC GGACACCAAC GCGCGCGTGG TCGTGCGGCA AGGGGCCAAC
ACGGTCTACG AGGAAACCGT GTCGCCGGGG CCGTTCGAAT TCAACGATCT TCCCGCCACG
GGGTACGGCG GCGATCTCGA CGTGACGGTC ACGGAATCGG ACGGGCGCGT GCGGCGCTTC
TCGGTGCCGT TTGCCGCCGT TCCGCAACTG TTGCGGCCGG GGCGGCACCG TTTCAACGTC
ACGGTCGGTC AGTATCGGGA CAATGCCGTC GATGTGAAGC CGTGGGTGGC ACAACTGGTT
TACCAGCGAG GCATAACGAA TCTCGTCACC GCCTACGCCG GCGCATTGTC GTCGACAGGT
TACGGTTCCG GCGTGCTTGG GGTGGCGCTC AATACGTCGG TCGGCGCATT CGCGTTCGAC
GTCACGTCCG CGCACACGAG TGTGCCGGGT CGGCGCACCT ACCACGGTCT CAGCTCGCGT
ATCACCTACA GCAAGATGCT GGAGCCGACG GGAACCAATT TTTCGGTGGC CGCGTACCGC
TATTCGACCT CGAACTTCTT CAGTCTCCAG GATGCAGTGA ACGCACGCAG GGATTGGAGT
GGTTCGATTG GTCAGTACAA CTATCGGGCC AGGACGCGTC TGCAACTCAA TGTCAACCAG
CGCCTGGGCG ATCGAAGTGC CCTCTATGTC ACGGGAAGTT CGCAGGACTA TTGGGGCGGG
CAGCGGGGAA GGGATCTGCA GTATCAGGTC GGCTTCAACA GCACATTCAG GCGCATGTCG
TATTCGGTGT ATGCGCAGCG TGCCCGTAAC GGCGACGACC GGACGGTTAC CCAGGTGGGG
ATCAATTTGA CGATCCCGCT CGGCAAGCAG ACGTACACGA AGAGCCCCGT CTTCAATTCA
TTGACCACGT CGGCCTCGCG TGATTCGAGC GGCAATAGCG CCATTCAGAT GGACATGTCC
GGCAGCAAGG GAACCATCGC GCCGTTCAAC TACGGGGTCA CCGCATCGCG CATCGCCGGG
GGCGATACGA GTGCGCTGTC GTCGTTCGGC GGCTACGGGA CCTATCGGTC GTCTGTCGGC
ACCTACAGCG CGAACGCGTC GCTCAGCAAC AAGATGCGTC AGGCGTCGCT CGGCGCGAAC
GGCGCGATGA TCATCCATCG GGGCGGTGTC ACGTTGAGCC CGCCGCTTGG TCCGGCGGCG
GCGTTGATCG AGGCGAAGGG CGCGACCGGC GGGCAGATCG TCAACGGACA AGGCGCATCG
ATCGATCGTT TCGGCTACGC GGTGATTCCG TCACTCACGC CGTATCGCGT CAACACGGTC
GAGATCGACC CATCCAGACT TCCCGACGAC GTCGAACTCG GGAACACGAG CGAGGAAGTG
GTGCCGCGCT ACAACTCCGT CGTATTCGTC AAGATGAGCA CGGTGCGGGG GCGTCCGGTG
TTCGCGACGA TGGAGCGGCA GGATGGCTCG CCGCTGCCGA TGGGCACTCA ATTGTTCGAT
GCCGCGGGCA AATCGGTCGG CGGCGTCGGC CAAGGCGGCA TGGCGTTCCT GCGCGGGCTG
GAAGGCTCCG GCGAACTGAC CGCGAAGTGG GGAATCGGTC CCGCGGACCG GTGCAGCTTG
CCTTATGCGG TACCGGCCGC ATCGGCGAAT GCGGGGAAGA TCAAGATGGC GACGCGCGTG
CGCTTGCGCT GCGACACGGC GGCGATGCAA TGA
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| Protein sequence | MVQAARNFAL GGGHDVDLSV FRRRRVALAV SLAFGIGFSG DDAGAVELDW PDVGQQASGE
PVMIVAARTN TDPVMQVATR TNTDPVMQVA ARAPTEPAAV AFNPRLFAGG GVDLSRFAKG
NPVEPGSYAV DVTVNGKGRG RRDVPFLAVP GSDVAMPCFT LATLEELGVD GDKLVRQLRR
SKQDDDAGAP AAHELAPDAC LALRDTIPDA TYSFDSADLT LDVTIPQTVM SKRAYGYVDP
SRWDEGINVG LLQYNVNGYT SESNFFGHNF SSLYTGLQSG VNIGPWRFRH RSTLNWASRS
AGVSWRSLET FVQRDITALR SQIVLGDSFT SGDVFDSFGV RGVQLSSDDR MLPNSLQAYA
PTIRGVADTN ARVVVRQGAN TVYEETVSPG PFEFNDLPAT GYGGDLDVTV TESDGRVRRF
SVPFAAVPQL LRPGRHRFNV TVGQYRDNAV DVKPWVAQLV YQRGITNLVT AYAGALSSTG
YGSGVLGVAL NTSVGAFAFD VTSAHTSVPG RRTYHGLSSR ITYSKMLEPT GTNFSVAAYR
YSTSNFFSLQ DAVNARRDWS GSIGQYNYRA RTRLQLNVNQ RLGDRSALYV TGSSQDYWGG
QRGRDLQYQV GFNSTFRRMS YSVYAQRARN GDDRTVTQVG INLTIPLGKQ TYTKSPVFNS
LTTSASRDSS GNSAIQMDMS GSKGTIAPFN YGVTASRIAG GDTSALSSFG GYGTYRSSVG
TYSANASLSN KMRQASLGAN GAMIIHRGGV TLSPPLGPAA ALIEAKGATG GQIVNGQGAS
IDRFGYAVIP SLTPYRVNTV EIDPSRLPDD VELGNTSEEV VPRYNSVVFV KMSTVRGRPV
FATMERQDGS PLPMGTQLFD AAGKSVGGVG QGGMAFLRGL EGSGELTAKW GIGPADRCSL
PYAVPAASAN AGKIKMATRV RLRCDTAAMQ
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